The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis

Age-related hearing impairment (ARHI) is the most common sensory disorder in older adults. We conducted a genome-wide association meta-analysis of 121,934 ARHI cases and 591,699 controls from Iceland and the UK. We identified 21 novel sequence variants, of which 13 are rare, under either additive or...

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Published in:Communications Biology
Main Authors: Ivarsdottir, Erna V., Holm, Hilma, Benonisdottir, Stefania, Olafsdottir, Thorhildur, Sveinbjornsson, Gardar, Thorleifsson, Gudmar, Eggertsson, Hannes P., Halldorsson, Gisli H., Hjorleifsson, Kristjan E., Melsted, Páll, Gylfason, Arnaldur, Arnadottir, Gudny A., Oddsson, Asmundur, Jensson, Brynjar O., Jonasdottir, Aslaug, Jonasdottir, Adalbjorg, Juliusdottir, Thorhildur, Stefansdottir, Lilja, Tragante, Vinicius, Halldorsson, Bjarni V., Petersen, Hannes, Thorgeirsson, Gudmundur, Thorsteinsdottir, Unnur, Sulem, Patrick, Hinriksdottir, Ingibjorg, Jonsdottir, Ingileif, Gudbjartsson, Daniel F., Stefansson, Kari
Format: Article in Journal/Newspaper
Language:unknown
Published: Nature Publishing Group 2021
Subjects:
Online Access:https://doi.org/10.1038/s42003-021-02224-9
https://www.ncbi.nlm.nih.gov/pmc/PMC8190123
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spelling ftcaltechauth:oai:authors.library.caltech.edu:9cx95-nz677 2024-09-09T19:47:56+00:00 The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis Ivarsdottir, Erna V. Holm, Hilma Benonisdottir, Stefania Olafsdottir, Thorhildur Sveinbjornsson, Gardar Thorleifsson, Gudmar Eggertsson, Hannes P. Halldorsson, Gisli H. Hjorleifsson, Kristjan E. Melsted, Páll Gylfason, Arnaldur Arnadottir, Gudny A. Oddsson, Asmundur Jensson, Brynjar O. Jonasdottir, Aslaug Jonasdottir, Adalbjorg Juliusdottir, Thorhildur Stefansdottir, Lilja Tragante, Vinicius Halldorsson, Bjarni V. Petersen, Hannes Thorgeirsson, Gudmundur Thorsteinsdottir, Unnur Sulem, Patrick Hinriksdottir, Ingibjorg Jonsdottir, Ingileif Gudbjartsson, Daniel F. Stefansson, Kari 2021-06-09 https://doi.org/10.1038/s42003-021-02224-9 https://www.ncbi.nlm.nih.gov/pmc/PMC8190123 unknown Nature Publishing Group http://www.decode.com/summarydata https://github.com/lh3/bwa https://broadinstitute.github.io/picard/ http://samtools.github.io/ https://github.com/arq5x/bedtools2/ https://github.com/DecodeGenetics/graphtyper https://github.com/Ensembl/ensembl-vep https://doi.org/10.1038/s42003-021-02224-9 oai:authors.library.caltech.edu:9cx95-nz677 https://www.ncbi.nlm.nih.gov/pmc/PMC8190123 eprintid:109760 resolverid:CaltechAUTHORS:20210709-204110916 info:eu-repo/semantics/openAccess Other Communications Biology, 4, Art. No. 706, (2021-06-09) Ageing Genetic association study Genome-wide association studies info:eu-repo/semantics/article 2021 ftcaltechauth https://doi.org/10.1038/s42003-021-02224-9 2024-08-06T15:35:05Z Age-related hearing impairment (ARHI) is the most common sensory disorder in older adults. We conducted a genome-wide association meta-analysis of 121,934 ARHI cases and 591,699 controls from Iceland and the UK. We identified 21 novel sequence variants, of which 13 are rare, under either additive or recessive models. Of special interest are a missense variant in LOXHD1 (MAF = 1.96%) and a tandem duplication in FBF1 covering 4 exons (MAF = 0.22%) associating with ARHI (OR = 3.7 for homozygotes, P = 1.7 × 10â»Â²Â² and OR = 4.2 for heterozygotes, P = 5.7 × 10â»Â²â·, respectively). We constructed an ARHI genetic risk score (GRS) using common variants and showed that a common variant GRS can identify individuals at risk comparable to carriers of rare high penetrance variants. Furthermore, we found that ARHI and tinnitus share genetic causes. This study sheds a new light on the genetic architecture of ARHI, through several rare variants in both Mendelian deafness genes and genes not previously linked to hearing. © The Author(s) 2021. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. Received 06 August 2020; Accepted 17 May 2021; Published 09 June 2021. We would like to thank all study participants for their ... Article in Journal/Newspaper Iceland Caltech Authors (California Institute of Technology) Communications Biology 4 1
institution Open Polar
collection Caltech Authors (California Institute of Technology)
op_collection_id ftcaltechauth
language unknown
topic Ageing
Genetic association study
Genome-wide association studies
spellingShingle Ageing
Genetic association study
Genome-wide association studies
Ivarsdottir, Erna V.
Holm, Hilma
Benonisdottir, Stefania
Olafsdottir, Thorhildur
Sveinbjornsson, Gardar
Thorleifsson, Gudmar
Eggertsson, Hannes P.
Halldorsson, Gisli H.
Hjorleifsson, Kristjan E.
Melsted, Páll
Gylfason, Arnaldur
Arnadottir, Gudny A.
Oddsson, Asmundur
Jensson, Brynjar O.
Jonasdottir, Aslaug
Jonasdottir, Adalbjorg
Juliusdottir, Thorhildur
Stefansdottir, Lilja
Tragante, Vinicius
Halldorsson, Bjarni V.
Petersen, Hannes
Thorgeirsson, Gudmundur
Thorsteinsdottir, Unnur
Sulem, Patrick
Hinriksdottir, Ingibjorg
Jonsdottir, Ingileif
Gudbjartsson, Daniel F.
Stefansson, Kari
The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis
topic_facet Ageing
Genetic association study
Genome-wide association studies
description Age-related hearing impairment (ARHI) is the most common sensory disorder in older adults. We conducted a genome-wide association meta-analysis of 121,934 ARHI cases and 591,699 controls from Iceland and the UK. We identified 21 novel sequence variants, of which 13 are rare, under either additive or recessive models. Of special interest are a missense variant in LOXHD1 (MAF = 1.96%) and a tandem duplication in FBF1 covering 4 exons (MAF = 0.22%) associating with ARHI (OR = 3.7 for homozygotes, P = 1.7 × 10â»Â²Â² and OR = 4.2 for heterozygotes, P = 5.7 × 10â»Â²â·, respectively). We constructed an ARHI genetic risk score (GRS) using common variants and showed that a common variant GRS can identify individuals at risk comparable to carriers of rare high penetrance variants. Furthermore, we found that ARHI and tinnitus share genetic causes. This study sheds a new light on the genetic architecture of ARHI, through several rare variants in both Mendelian deafness genes and genes not previously linked to hearing. © The Author(s) 2021. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. Received 06 August 2020; Accepted 17 May 2021; Published 09 June 2021. We would like to thank all study participants for their ...
format Article in Journal/Newspaper
author Ivarsdottir, Erna V.
Holm, Hilma
Benonisdottir, Stefania
Olafsdottir, Thorhildur
Sveinbjornsson, Gardar
Thorleifsson, Gudmar
Eggertsson, Hannes P.
Halldorsson, Gisli H.
Hjorleifsson, Kristjan E.
Melsted, Páll
Gylfason, Arnaldur
Arnadottir, Gudny A.
Oddsson, Asmundur
Jensson, Brynjar O.
Jonasdottir, Aslaug
Jonasdottir, Adalbjorg
Juliusdottir, Thorhildur
Stefansdottir, Lilja
Tragante, Vinicius
Halldorsson, Bjarni V.
Petersen, Hannes
Thorgeirsson, Gudmundur
Thorsteinsdottir, Unnur
Sulem, Patrick
Hinriksdottir, Ingibjorg
Jonsdottir, Ingileif
Gudbjartsson, Daniel F.
Stefansson, Kari
author_facet Ivarsdottir, Erna V.
Holm, Hilma
Benonisdottir, Stefania
Olafsdottir, Thorhildur
Sveinbjornsson, Gardar
Thorleifsson, Gudmar
Eggertsson, Hannes P.
Halldorsson, Gisli H.
Hjorleifsson, Kristjan E.
Melsted, Páll
Gylfason, Arnaldur
Arnadottir, Gudny A.
Oddsson, Asmundur
Jensson, Brynjar O.
Jonasdottir, Aslaug
Jonasdottir, Adalbjorg
Juliusdottir, Thorhildur
Stefansdottir, Lilja
Tragante, Vinicius
Halldorsson, Bjarni V.
Petersen, Hannes
Thorgeirsson, Gudmundur
Thorsteinsdottir, Unnur
Sulem, Patrick
Hinriksdottir, Ingibjorg
Jonsdottir, Ingileif
Gudbjartsson, Daniel F.
Stefansson, Kari
author_sort Ivarsdottir, Erna V.
title The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis
title_short The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis
title_full The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis
title_fullStr The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis
title_full_unstemmed The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis
title_sort genetic architecture of age-related hearing impairment revealed by genome-wide association analysis
publisher Nature Publishing Group
publishDate 2021
url https://doi.org/10.1038/s42003-021-02224-9
https://www.ncbi.nlm.nih.gov/pmc/PMC8190123
genre Iceland
genre_facet Iceland
op_source Communications Biology, 4, Art. No. 706, (2021-06-09)
op_relation http://www.decode.com/summarydata
https://github.com/lh3/bwa
https://broadinstitute.github.io/picard/
http://samtools.github.io/
https://github.com/arq5x/bedtools2/
https://github.com/DecodeGenetics/graphtyper
https://github.com/Ensembl/ensembl-vep
https://doi.org/10.1038/s42003-021-02224-9
oai:authors.library.caltech.edu:9cx95-nz677
https://www.ncbi.nlm.nih.gov/pmc/PMC8190123
eprintid:109760
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