Data from: The evolutionary history of dogs in the Americas
Abstract Dogs were present in the Americas prior to the arrival of European colonists, but the origin and fate of these pre-contact dogs are largely unknown. We sequenced 71 mitochondrial and seven nuclear genomes from ancient North American and Siberian dogs spanning ~9,000 years. Our analysis indi...
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ftborealisdata:doi:10.5683/SP2/FFOWXI 2023-05-15T15:49:55+02:00 Data from: The evolutionary history of dogs in the Americas Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. https://doi.org/10.5683/SP2/FFOWXI unknown Borealis https://doi.org/10.5683/SP2/FFOWXI Other Canis lupus familiaris Canis lupus ftborealisdata https://doi.org/10.5683/SP2/FFOWXI 2022-10-10T05:30:29Z Abstract Dogs were present in the Americas prior to the arrival of European colonists, but the origin and fate of these pre-contact dogs are largely unknown. We sequenced 71 mitochondrial and seven nuclear genomes from ancient North American and Siberian dogs spanning ~9,000 years. Our analysis indicates that American dogs were not domesticated from North American wolves. Instead, American dogs form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people. After the arrival of Europeans, native American dogs almost completely disappeared, leaving a minimal genetic legacy in modern dog populations. Remarkably, the closest detectable extant lineage to pre-contact American dogs is the canine transmissible venereal tumor, a contagious cancer clone derived from an individual dog that lived up to 8,000 years ago. Usage notes Mitochondrial DNA FASTA file FASTA file containing 1166 dog mtDNA genomes used in this study full_mtDNA_alignment.fasta NEXUS tree Maximum likelihood tree (RAxML) of 1166 dogs mtDNA genomes used in this study full_mtDNA_alignment.tre Excel sheet Publication source of the 1166 mtDNA genomes used in this study full_mtDNA_alignment.xlsx Plink (bed) file Contains genotype for dogs 54 dogs full_data.bed Plink file (bim) Contains genotype for 54 dogs full_data.bim Plink file (fam) Contains genotype for 54 dogs full_data.fam NJ tree in Figure 2b NJ tree in Figure 2b (see Table S2 for more info) Figure_b.tre Nexus file Nexus file used for producing Figure S12 (MKV model in MrBayes) Binary_char_MKV.nex NEXUS tree Bayesian tree in Figure S12 (see Table S2 for more info) Figure_S12.tre Other/Unknown Material Canis lupus Siberia Borealis |
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Other Canis lupus familiaris Canis lupus |
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Other Canis lupus familiaris Canis lupus Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. Data from: The evolutionary history of dogs in the Americas |
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Other Canis lupus familiaris Canis lupus |
description |
Abstract Dogs were present in the Americas prior to the arrival of European colonists, but the origin and fate of these pre-contact dogs are largely unknown. We sequenced 71 mitochondrial and seven nuclear genomes from ancient North American and Siberian dogs spanning ~9,000 years. Our analysis indicates that American dogs were not domesticated from North American wolves. Instead, American dogs form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people. After the arrival of Europeans, native American dogs almost completely disappeared, leaving a minimal genetic legacy in modern dog populations. Remarkably, the closest detectable extant lineage to pre-contact American dogs is the canine transmissible venereal tumor, a contagious cancer clone derived from an individual dog that lived up to 8,000 years ago. Usage notes Mitochondrial DNA FASTA file FASTA file containing 1166 dog mtDNA genomes used in this study full_mtDNA_alignment.fasta NEXUS tree Maximum likelihood tree (RAxML) of 1166 dogs mtDNA genomes used in this study full_mtDNA_alignment.tre Excel sheet Publication source of the 1166 mtDNA genomes used in this study full_mtDNA_alignment.xlsx Plink (bed) file Contains genotype for dogs 54 dogs full_data.bed Plink file (bim) Contains genotype for 54 dogs full_data.bim Plink file (fam) Contains genotype for 54 dogs full_data.fam NJ tree in Figure 2b NJ tree in Figure 2b (see Table S2 for more info) Figure_b.tre Nexus file Nexus file used for producing Figure S12 (MKV model in MrBayes) Binary_char_MKV.nex NEXUS tree Bayesian tree in Figure S12 (see Table S2 for more info) Figure_S12.tre |
author |
Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. |
author_facet |
Leathlobhair, Máire Ní Perri, Angela R. Irving-Pease, Evan K. Witt, Kelsey E. Linderholm, Anna Haile, James Lebrasseur, Ophelie Ameen, Carly Blick, Jeffrey Boyko, Adam R. Brace, Selina Nunes Cortes, Yahaira Crockford, Susan J. Devault, Alison Dimopoulos, Evangelos A. Eldridge, Morley Enk, Jacob Gopalakrishnan, Shyam Gori, Kevin Grimes, Vaughan Guiry, Eric Hansen, Anders J. Hulme-Beaman, Ardern Johnson, John Kitchen, Andrew Kasparov, Aleksei K. Kwon, Young-Mi Nikolskiy, Pavel A. Peraza Lope, Carlos Manin, Aurélie Martin, Terrance Meyer, Michael Noack Myers, Kelsey Omura, Mark Rouillard, Jean-Marie Pavlova, Elena Y. Sciulli, Paul Mikkel-Holger, Sinding S. Strakova, Andrea Ivanova, Varvara V. Widga, Christopher Willerslev, Eske Pitulko, Vladimir V. Barnes, Ian Gilbert, M. Thomas P. Dobney, Keith M. Malhi, Ripan S. Murchison, Elizabeth P. Larson, Greger Frantz, Laurent A. F. |
author_sort |
Leathlobhair, Máire Ní |
title |
Data from: The evolutionary history of dogs in the Americas |
title_short |
Data from: The evolutionary history of dogs in the Americas |
title_full |
Data from: The evolutionary history of dogs in the Americas |
title_fullStr |
Data from: The evolutionary history of dogs in the Americas |
title_full_unstemmed |
Data from: The evolutionary history of dogs in the Americas |
title_sort |
data from: the evolutionary history of dogs in the americas |
publisher |
Borealis |
url |
https://doi.org/10.5683/SP2/FFOWXI |
genre |
Canis lupus Siberia |
genre_facet |
Canis lupus Siberia |
op_relation |
https://doi.org/10.5683/SP2/FFOWXI |
op_doi |
https://doi.org/10.5683/SP2/FFOWXI |
_version_ |
1766384923171618816 |