Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach

Geochemical variations of sedimentary records contain vital information for understanding paleoenvironment and paleoclimate. However, to obtain quantitative data in the laboratory is laborious, which ultimately restricts the temporal and spatial resolution. Quantification based on fast-acquisition a...

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Published in:Scientific Reports
Main Authors: Lee, An-Sheng, Chao, Weng-Si, Liou, Sofia Ya Hsuan, Tiedemann, Ralf, Zolitschka, Bernd, Lembke-Jene, Lester
Format: Article in Journal/Newspaper
Language:unknown
Published: Springer Science and Business Media LLC 2022
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Online Access:https://epic.awi.de/id/eprint/57599/
https://epic.awi.de/id/eprint/57599/1/s41598-022-25377-x.pdf
https://hdl.handle.net/10013/epic.23bed104-719f-4e35-8fc4-6b509655ae3d
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spelling ftawi:oai:epic.awi.de:57599 2023-07-16T04:00:59+02:00 Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach Lee, An-Sheng Chao, Weng-Si Liou, Sofia Ya Hsuan Tiedemann, Ralf Zolitschka, Bernd Lembke-Jene, Lester 2022-12-02 application/pdf https://epic.awi.de/id/eprint/57599/ https://epic.awi.de/id/eprint/57599/1/s41598-022-25377-x.pdf https://hdl.handle.net/10013/epic.23bed104-719f-4e35-8fc4-6b509655ae3d unknown Springer Science and Business Media LLC https://epic.awi.de/id/eprint/57599/1/s41598-022-25377-x.pdf Lee, A. S. , Chao, W. S. orcid:0000-0002-8218-7598 , Liou, S. Y. H. , Tiedemann, R. orcid:0000-0001-7211-8049 , Zolitschka, B. and Lembke-Jene, L. orcid:0000-0002-6873-8533 (2022) Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach , Scientific Reports, 12 (1) . doi:10.1038/s41598-022-25377-x <https://doi.org/10.1038/s41598-022-25377-x> , hdl:10013/epic.23bed104-719f-4e35-8fc4-6b509655ae3d EPIC3Scientific Reports, Springer Science and Business Media LLC, 12(1), 11 p., ISSN: 2045-2322 Article isiRev 2022 ftawi https://doi.org/10.1038/s41598-022-25377-x 2023-06-25T23:20:01Z Geochemical variations of sedimentary records contain vital information for understanding paleoenvironment and paleoclimate. However, to obtain quantitative data in the laboratory is laborious, which ultimately restricts the temporal and spatial resolution. Quantification based on fast-acquisition and high-resolution provides a potential solution but is restricted to qualitative X-ray fluorescence (XRF) core scanning data. Here, we apply machine learning (ML) to advance the quantification progress and target calcium carbonate (CaCO3) and total organic carbon (TOC) for quantification to test the potential of such an XRF-ML approach. Raw XRF spectra are used as input data instead of software-based extraction of elemental intensities to avoid bias and increase information. Our dataset comprises Pacific and Southern Ocean marine sediment cores from high- to mid-latitudes to extend the applicability of quantification models from a site-specific to a multi-regional scale. ML-built models are carefully evaluated with a training set, a test set and a case study. The acquired ML-models provide better results with R2 of 0.96 for CaCO3 and 0.78 for TOC than conventional methods. In our case study, the ML-performance for TOC is comparably lower but still provides potential for future optimization. Altogether, this study allows to conveniently generate high-resolution bulk chemistry records without losing accuracy. Article in Journal/Newspaper Southern Ocean Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center) Pacific Southern Ocean Scientific Reports 12 1
institution Open Polar
collection Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center)
op_collection_id ftawi
language unknown
description Geochemical variations of sedimentary records contain vital information for understanding paleoenvironment and paleoclimate. However, to obtain quantitative data in the laboratory is laborious, which ultimately restricts the temporal and spatial resolution. Quantification based on fast-acquisition and high-resolution provides a potential solution but is restricted to qualitative X-ray fluorescence (XRF) core scanning data. Here, we apply machine learning (ML) to advance the quantification progress and target calcium carbonate (CaCO3) and total organic carbon (TOC) for quantification to test the potential of such an XRF-ML approach. Raw XRF spectra are used as input data instead of software-based extraction of elemental intensities to avoid bias and increase information. Our dataset comprises Pacific and Southern Ocean marine sediment cores from high- to mid-latitudes to extend the applicability of quantification models from a site-specific to a multi-regional scale. ML-built models are carefully evaluated with a training set, a test set and a case study. The acquired ML-models provide better results with R2 of 0.96 for CaCO3 and 0.78 for TOC than conventional methods. In our case study, the ML-performance for TOC is comparably lower but still provides potential for future optimization. Altogether, this study allows to conveniently generate high-resolution bulk chemistry records without losing accuracy.
format Article in Journal/Newspaper
author Lee, An-Sheng
Chao, Weng-Si
Liou, Sofia Ya Hsuan
Tiedemann, Ralf
Zolitschka, Bernd
Lembke-Jene, Lester
spellingShingle Lee, An-Sheng
Chao, Weng-Si
Liou, Sofia Ya Hsuan
Tiedemann, Ralf
Zolitschka, Bernd
Lembke-Jene, Lester
Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
author_facet Lee, An-Sheng
Chao, Weng-Si
Liou, Sofia Ya Hsuan
Tiedemann, Ralf
Zolitschka, Bernd
Lembke-Jene, Lester
author_sort Lee, An-Sheng
title Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_short Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_full Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_fullStr Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_full_unstemmed Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_sort quantifying calcium carbonate and organic carbon content in marine sediments from xrf-scanning spectra with a machine learning approach
publisher Springer Science and Business Media LLC
publishDate 2022
url https://epic.awi.de/id/eprint/57599/
https://epic.awi.de/id/eprint/57599/1/s41598-022-25377-x.pdf
https://hdl.handle.net/10013/epic.23bed104-719f-4e35-8fc4-6b509655ae3d
geographic Pacific
Southern Ocean
geographic_facet Pacific
Southern Ocean
genre Southern Ocean
genre_facet Southern Ocean
op_source EPIC3Scientific Reports, Springer Science and Business Media LLC, 12(1), 11 p., ISSN: 2045-2322
op_relation https://epic.awi.de/id/eprint/57599/1/s41598-022-25377-x.pdf
Lee, A. S. , Chao, W. S. orcid:0000-0002-8218-7598 , Liou, S. Y. H. , Tiedemann, R. orcid:0000-0001-7211-8049 , Zolitschka, B. and Lembke-Jene, L. orcid:0000-0002-6873-8533 (2022) Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach , Scientific Reports, 12 (1) . doi:10.1038/s41598-022-25377-x <https://doi.org/10.1038/s41598-022-25377-x> , hdl:10013/epic.23bed104-719f-4e35-8fc4-6b509655ae3d
op_doi https://doi.org/10.1038/s41598-022-25377-x
container_title Scientific Reports
container_volume 12
container_issue 1
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