A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
<jats:p>Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environ...
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ftawi:oai:epic.awi.de:57488 2023-07-16T03:59:09+02:00 A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó 2021-04-02 application/pdf https://epic.awi.de/id/eprint/57488/ https://epic.awi.de/id/eprint/57488/1/A%20total%20of%20219%20metagenome-assembled%20genomes%20of%20microorganisms%20from%20Icelandic%20marine%20waters.pdf https://hdl.handle.net/10013/epic.4623ba9d-61de-4472-8300-addb2c5d0f56 unknown PeerJ https://epic.awi.de/id/eprint/57488/1/A%20total%20of%20219%20metagenome-assembled%20genomes%20of%20microorganisms%20from%20Icelandic%20marine%20waters.pdf Jégousse, C. , Vannier, P. , Groben, R. , Glöckner, F. O. orcid:0000-0001-8528-9023 and Marteinsson, V. (2021) A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters , PeerJ, 9 , e11112-e11112 . doi:10.7717/peerj.11112 <https://doi.org/10.7717/peerj.11112> , hdl:10013/epic.4623ba9d-61de-4472-8300-addb2c5d0f56 EPIC3PeerJ, PeerJ, 9, pp. e11112-e11112, ISSN: 2167-8359 Article NonPeerReviewed 2021 ftawi https://doi.org/10.7717/peerj.11112 2023-06-25T23:19:57Z <jats:p>Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome.</jats:p> Article in Journal/Newspaper Iceland Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center) PeerJ 9 e11112 |
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Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center) |
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ftawi |
language |
unknown |
description |
<jats:p>Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome.</jats:p> |
format |
Article in Journal/Newspaper |
author |
Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó |
spellingShingle |
Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
author_facet |
Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó |
author_sort |
Jégousse, Clara |
title |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_short |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_full |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_fullStr |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_full_unstemmed |
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters |
title_sort |
total of 219 metagenome-assembled genomes of microorganisms from icelandic marine waters |
publisher |
PeerJ |
publishDate |
2021 |
url |
https://epic.awi.de/id/eprint/57488/ https://epic.awi.de/id/eprint/57488/1/A%20total%20of%20219%20metagenome-assembled%20genomes%20of%20microorganisms%20from%20Icelandic%20marine%20waters.pdf https://hdl.handle.net/10013/epic.4623ba9d-61de-4472-8300-addb2c5d0f56 |
genre |
Iceland |
genre_facet |
Iceland |
op_source |
EPIC3PeerJ, PeerJ, 9, pp. e11112-e11112, ISSN: 2167-8359 |
op_relation |
https://epic.awi.de/id/eprint/57488/1/A%20total%20of%20219%20metagenome-assembled%20genomes%20of%20microorganisms%20from%20Icelandic%20marine%20waters.pdf Jégousse, C. , Vannier, P. , Groben, R. , Glöckner, F. O. orcid:0000-0001-8528-9023 and Marteinsson, V. (2021) A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters , PeerJ, 9 , e11112-e11112 . doi:10.7717/peerj.11112 <https://doi.org/10.7717/peerj.11112> , hdl:10013/epic.4623ba9d-61de-4472-8300-addb2c5d0f56 |
op_doi |
https://doi.org/10.7717/peerj.11112 |
container_title |
PeerJ |
container_volume |
9 |
container_start_page |
e11112 |
_version_ |
1771546680455331840 |