Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing
Protists in the central Arctic Ocean are adapted to the harsh environmental conditions of its various habitats. During the Polarstern cruise ARK-XXVI/3 in 2011, at one sea ice station, large aggregates accumulated at the bottom of the melt ponds. In this study, the protist assemblages of the bottom...
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ftawi:oai:epic.awi.de:35475 2024-09-15T17:51:17+00:00 Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing Kilias, Estelle Silvia Peeken, Ilka Metfies, Katja 2014-11-05 application/pdf https://epic.awi.de/id/eprint/35475/ https://epic.awi.de/id/eprint/35475/1/Kilias2014.pdf https://hdl.handle.net/10013/epic.44496 https://hdl.handle.net/10013/epic.44496.d001 unknown WILEY-BLACKWELL PUBLISHING https://epic.awi.de/id/eprint/35475/1/Kilias2014.pdf https://hdl.handle.net/10013/epic.44496.d001 Kilias, E. S. , Peeken, I. orcid:0000-0003-1531-1664 and Metfies, K. orcid:0000-0003-3073-8033 (2014) Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing , Polar Research, 33 . doi:10.3402/polar.v33.23466 <https://doi.org/10.3402/polar.v33.23466> , hdl:10013/epic.44496 EPIC3Polar Research, WILEY-BLACKWELL PUBLISHING, 33, ISSN: 0800-0395 Article isiRev 2014 ftawi https://doi.org/10.3402/polar.v33.23466 2024-06-24T04:09:53Z Protists in the central Arctic Ocean are adapted to the harsh environmental conditions of its various habitats. During the Polarstern cruise ARK-XXVI/3 in 2011, at one sea ice station, large aggregates accumulated at the bottom of the melt ponds. In this study, the protist assemblages of the bottom layer of the sea ice and melt pond aggregate were investigated using flow cytometry and 454-pyrosequencing. The objective is to provide a first molecular overview of protist diversity in these habitats and to consider the overlaps and/or differences in the community compositions. Results of flow cytometry pointed to a cell size distribution that was dominated by 3-10 µm nanoflagellates. The phylogenetic classification of all sequences was conducted at a high taxonomic level, while a selection of abundant (≥1% of total reads) sequences was further classified at a lower level. On the high taxonomic level, both habitats showed very similar community structures, dominated by chrysophytes and chlorophytes. On the lower taxonomic level, dissimilarities in the diversity of both groups were encountered in the abundant biosphere. While sea ice chlorophytes and chrysophytes were dominated by Chlamydomonas/Chloromonas spp and Ochromonas spp, the melt pond aggregate was dominated by Carteria sp., Ochromonas spp. and Dinobryon faculiferum. We suppose that the relatively high similarity in diversity is a consequence of melt pond freshwater seeping through porous sea ice in late summer. Differences in the abundant biosphere nevertheless indicate that differences in both habitats are also strong enough to select for different dominant species. Article in Journal/Newspaper Arctic Arctic Ocean Polar Research Sea ice Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center) Polar Research 33 1 23466 |
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Open Polar |
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Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center) |
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ftawi |
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unknown |
description |
Protists in the central Arctic Ocean are adapted to the harsh environmental conditions of its various habitats. During the Polarstern cruise ARK-XXVI/3 in 2011, at one sea ice station, large aggregates accumulated at the bottom of the melt ponds. In this study, the protist assemblages of the bottom layer of the sea ice and melt pond aggregate were investigated using flow cytometry and 454-pyrosequencing. The objective is to provide a first molecular overview of protist diversity in these habitats and to consider the overlaps and/or differences in the community compositions. Results of flow cytometry pointed to a cell size distribution that was dominated by 3-10 µm nanoflagellates. The phylogenetic classification of all sequences was conducted at a high taxonomic level, while a selection of abundant (≥1% of total reads) sequences was further classified at a lower level. On the high taxonomic level, both habitats showed very similar community structures, dominated by chrysophytes and chlorophytes. On the lower taxonomic level, dissimilarities in the diversity of both groups were encountered in the abundant biosphere. While sea ice chlorophytes and chrysophytes were dominated by Chlamydomonas/Chloromonas spp and Ochromonas spp, the melt pond aggregate was dominated by Carteria sp., Ochromonas spp. and Dinobryon faculiferum. We suppose that the relatively high similarity in diversity is a consequence of melt pond freshwater seeping through porous sea ice in late summer. Differences in the abundant biosphere nevertheless indicate that differences in both habitats are also strong enough to select for different dominant species. |
format |
Article in Journal/Newspaper |
author |
Kilias, Estelle Silvia Peeken, Ilka Metfies, Katja |
spellingShingle |
Kilias, Estelle Silvia Peeken, Ilka Metfies, Katja Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing |
author_facet |
Kilias, Estelle Silvia Peeken, Ilka Metfies, Katja |
author_sort |
Kilias, Estelle Silvia |
title |
Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing |
title_short |
Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing |
title_full |
Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing |
title_fullStr |
Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing |
title_full_unstemmed |
Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing |
title_sort |
insight into protist diversity in arctic sea ice and melt-pond aggregate obtained by pyrosequencing |
publisher |
WILEY-BLACKWELL PUBLISHING |
publishDate |
2014 |
url |
https://epic.awi.de/id/eprint/35475/ https://epic.awi.de/id/eprint/35475/1/Kilias2014.pdf https://hdl.handle.net/10013/epic.44496 https://hdl.handle.net/10013/epic.44496.d001 |
genre |
Arctic Arctic Ocean Polar Research Sea ice |
genre_facet |
Arctic Arctic Ocean Polar Research Sea ice |
op_source |
EPIC3Polar Research, WILEY-BLACKWELL PUBLISHING, 33, ISSN: 0800-0395 |
op_relation |
https://epic.awi.de/id/eprint/35475/1/Kilias2014.pdf https://hdl.handle.net/10013/epic.44496.d001 Kilias, E. S. , Peeken, I. orcid:0000-0003-1531-1664 and Metfies, K. orcid:0000-0003-3073-8033 (2014) Insight into protist diversity in Arctic sea ice and melt-pond aggregate obtained by pyrosequencing , Polar Research, 33 . doi:10.3402/polar.v33.23466 <https://doi.org/10.3402/polar.v33.23466> , hdl:10013/epic.44496 |
op_doi |
https://doi.org/10.3402/polar.v33.23466 |
container_title |
Polar Research |
container_volume |
33 |
container_issue |
1 |
container_start_page |
23466 |
_version_ |
1810293149484974080 |