Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield.
A novel psychrotolerant, Gram-negative, shiny white, curved-rod-shaped, facultatively anaerobic bacterium PB1T was isolated from a soil sample collected from a glacier forefield of the Larsemann Hills, East Antarctica. Isolate PB1T has catalase and low urease activity and hydrolyses gelatin and star...
Published in: | International Journal of Systematic and Evolutionary Microbiology |
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SOC GENERAL MICROBIOLOGY
2013
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Online Access: | https://epic.awi.de/id/eprint/34515/ https://hdl.handle.net/10013/epic.42739 |
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ftawi:oai:epic.awi.de:34515 2024-09-15T17:40:27+00:00 Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. Bajerski, Felizitas Ganzert, Lars Mangelsdorf, Kai Lipski, André Busse, Hans-Jürgen Padur, Lisa Wagner, Dirk 2013-09 https://epic.awi.de/id/eprint/34515/ https://hdl.handle.net/10013/epic.42739 unknown SOC GENERAL MICROBIOLOGY Bajerski, F. , Ganzert, L. , Mangelsdorf, K. , Lipski, A. , Busse, H. J. , Padur, L. and Wagner, D. (2013) Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. , INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 63 (9), pp. 3197-3203 . doi:10.1099/ijs.0.046920-0 <https://doi.org/10.1099/ijs.0.046920-0> , hdl:10013/epic.42739 EPIC3INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, SOC GENERAL MICROBIOLOGY, 63(9), pp. 3197-3203, ISSN: 1466-5026 Article isiRev 2013 ftawi https://doi.org/10.1099/ijs.0.046920-0 2024-06-24T04:08:32Z A novel psychrotolerant, Gram-negative, shiny white, curved-rod-shaped, facultatively anaerobic bacterium PB1T was isolated from a soil sample collected from a glacier forefield of the Larsemann Hills, East Antarctica. Isolate PB1T has catalase and low urease activity and hydrolyses gelatin and starch. Strain PB1T is able to grow between −5 °C and 30 °C with optimum growth at 14–20 °C. Glycerol, dl-arabinose, d-xylose, d-galactose, d-fructose, d-lyxose, d-fucose and potassium gluconate are used as sole carbon sources. The major quinone is ubiquinone Q-8. The major fatty acids (>10 %) for PB1T are C16 : 0 (19.1 %), C16 : 1ω7cis (44.6 %) and C18 : 1ω7cis (16.2 %). The major polyamines are putrescine [54.9 µmol (g dry weight)−1] and 2-hydroxy putrescine [18.5 µmol (g dry weight)−1]. DNA G+C content is 62.5 mol%. Strain PB1T is phylogenetically related to species of the genus Herbaspirillum, with highest 16S rRNA gene sequence similarities to Herbaspirillum canariense (97.3 %), Herbaspirillum aurantiacum (97.2 %), Herbaspirillum soli (97.2 %) and Herbaspirillum frisingense (97.0 %). The DNA–DNA relatedness values were below 30 % between PB1T and the type strains of Herbaspirillum canariense, Herbaspirillum aurantiacum and Herbaspirillum soli. The different geographical origin of strain PB1T from its closest phylogenetic relatives resulted in different phenotypic and genotypic specifications, whereby strain PBT represents a novel species of the genus Herbaspirillum, for which the name Herbaspirillum psychrotolerans is proposed. The type strain is PB1T (DSM 26001T = LMG 27282T). Article in Journal/Newspaper Antarc* Antarctica East Antarctica Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center) International Journal of Systematic and Evolutionary Microbiology 63 Pt_9 3197 3203 |
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Open Polar |
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Alfred Wegener Institute for Polar- and Marine Research (AWI): ePIC (electronic Publication Information Center) |
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ftawi |
language |
unknown |
description |
A novel psychrotolerant, Gram-negative, shiny white, curved-rod-shaped, facultatively anaerobic bacterium PB1T was isolated from a soil sample collected from a glacier forefield of the Larsemann Hills, East Antarctica. Isolate PB1T has catalase and low urease activity and hydrolyses gelatin and starch. Strain PB1T is able to grow between −5 °C and 30 °C with optimum growth at 14–20 °C. Glycerol, dl-arabinose, d-xylose, d-galactose, d-fructose, d-lyxose, d-fucose and potassium gluconate are used as sole carbon sources. The major quinone is ubiquinone Q-8. The major fatty acids (>10 %) for PB1T are C16 : 0 (19.1 %), C16 : 1ω7cis (44.6 %) and C18 : 1ω7cis (16.2 %). The major polyamines are putrescine [54.9 µmol (g dry weight)−1] and 2-hydroxy putrescine [18.5 µmol (g dry weight)−1]. DNA G+C content is 62.5 mol%. Strain PB1T is phylogenetically related to species of the genus Herbaspirillum, with highest 16S rRNA gene sequence similarities to Herbaspirillum canariense (97.3 %), Herbaspirillum aurantiacum (97.2 %), Herbaspirillum soli (97.2 %) and Herbaspirillum frisingense (97.0 %). The DNA–DNA relatedness values were below 30 % between PB1T and the type strains of Herbaspirillum canariense, Herbaspirillum aurantiacum and Herbaspirillum soli. The different geographical origin of strain PB1T from its closest phylogenetic relatives resulted in different phenotypic and genotypic specifications, whereby strain PBT represents a novel species of the genus Herbaspirillum, for which the name Herbaspirillum psychrotolerans is proposed. The type strain is PB1T (DSM 26001T = LMG 27282T). |
format |
Article in Journal/Newspaper |
author |
Bajerski, Felizitas Ganzert, Lars Mangelsdorf, Kai Lipski, André Busse, Hans-Jürgen Padur, Lisa Wagner, Dirk |
spellingShingle |
Bajerski, Felizitas Ganzert, Lars Mangelsdorf, Kai Lipski, André Busse, Hans-Jürgen Padur, Lisa Wagner, Dirk Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. |
author_facet |
Bajerski, Felizitas Ganzert, Lars Mangelsdorf, Kai Lipski, André Busse, Hans-Jürgen Padur, Lisa Wagner, Dirk |
author_sort |
Bajerski, Felizitas |
title |
Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. |
title_short |
Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. |
title_full |
Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. |
title_fullStr |
Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. |
title_full_unstemmed |
Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. |
title_sort |
herbaspirillum psychrotolerans sp. nov., a member of the family oxalobacteraceae from a glacier forefield. |
publisher |
SOC GENERAL MICROBIOLOGY |
publishDate |
2013 |
url |
https://epic.awi.de/id/eprint/34515/ https://hdl.handle.net/10013/epic.42739 |
genre |
Antarc* Antarctica East Antarctica |
genre_facet |
Antarc* Antarctica East Antarctica |
op_source |
EPIC3INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, SOC GENERAL MICROBIOLOGY, 63(9), pp. 3197-3203, ISSN: 1466-5026 |
op_relation |
Bajerski, F. , Ganzert, L. , Mangelsdorf, K. , Lipski, A. , Busse, H. J. , Padur, L. and Wagner, D. (2013) Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield. , INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 63 (9), pp. 3197-3203 . doi:10.1099/ijs.0.046920-0 <https://doi.org/10.1099/ijs.0.046920-0> , hdl:10013/epic.42739 |
op_doi |
https://doi.org/10.1099/ijs.0.046920-0 |
container_title |
International Journal of Systematic and Evolutionary Microbiology |
container_volume |
63 |
container_issue |
Pt_9 |
container_start_page |
3197 |
op_container_end_page |
3203 |
_version_ |
1810486503647739904 |