Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)

This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phy...

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Published in:ZooKeys
Main Authors: Hemery, Lenaig G., Ameziane, Nadia, Eleaume, Marc
Format: Article in Journal/Newspaper
Language:English
Published: Pensoft Publ 2013
Subjects:
Online Access:https://archimer.ifremer.fr/doc/00296/40758/39749.pdf
https://doi.org/10.3897/zookeys.315.5673
https://archimer.ifremer.fr/doc/00296/40758/
id ftarchimer:oai:archimer.ifremer.fr:40758
record_format openpolar
spelling ftarchimer:oai:archimer.ifremer.fr:40758 2023-05-15T13:24:13+02:00 Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea) Hemery, Lenaig G. Ameziane, Nadia Eleaume, Marc 2013-07-04 application/pdf https://archimer.ifremer.fr/doc/00296/40758/39749.pdf https://doi.org/10.3897/zookeys.315.5673 https://archimer.ifremer.fr/doc/00296/40758/ eng eng Pensoft Publ https://archimer.ifremer.fr/doc/00296/40758/39749.pdf doi:10.3897/zookeys.315.5673 https://archimer.ifremer.fr/doc/00296/40758/ Copyright Lenaïg G. Hemery et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. info:eu-repo/semantics/openAccess restricted use CC-BY Zookeys (1313-2989) (Pensoft Publ), 2013-07-04 , N. 315 , P. 55-64 Antarctica Crinoidea Cytochrome Oxydase subunit I Echinodermata Phylogeography Promachocrinus Southern Ocean Sub-Antarctic text Publication info:eu-repo/semantics/article 2013 ftarchimer https://doi.org/10.3897/zookeys.315.5673 2021-09-23T20:27:02Z This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d'Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eleaume, Museum national d'Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/ IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity ( species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke. Article in Journal/Newspaper Amundsen Sea Antarc* Antarctic Antarctic Peninsula Antarctica Bransfield Strait D'Urville Sea Davis Sea Dumont D'Urville Sea Ross Sea Southern Ocean Weddell Sea Archimer (Archive Institutionnelle de l'Ifremer - Institut français de recherche pour l'exploitation de la mer) Amundsen Sea Antarctic Antarctic Peninsula Bransfield Strait D'Urville Sea ENVELOPE(140.000,140.000,-65.000,-65.000) Davis Sea ENVELOPE(93.500,93.500,-66.000,-66.000) Dumont d'Urville ENVELOPE(140.017,140.017,-66.667,-66.667) Dumont-d'Urville ENVELOPE(140.013,140.013,-66.667,-66.667) Kerguelen Ross Sea Southern Ocean The Antarctic Weddell Weddell Sea ZooKeys 315 55 64
institution Open Polar
collection Archimer (Archive Institutionnelle de l'Ifremer - Institut français de recherche pour l'exploitation de la mer)
op_collection_id ftarchimer
language English
topic Antarctica
Crinoidea
Cytochrome Oxydase subunit I
Echinodermata
Phylogeography
Promachocrinus
Southern Ocean
Sub-Antarctic
spellingShingle Antarctica
Crinoidea
Cytochrome Oxydase subunit I
Echinodermata
Phylogeography
Promachocrinus
Southern Ocean
Sub-Antarctic
Hemery, Lenaig G.
Ameziane, Nadia
Eleaume, Marc
Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
topic_facet Antarctica
Crinoidea
Cytochrome Oxydase subunit I
Echinodermata
Phylogeography
Promachocrinus
Southern Ocean
Sub-Antarctic
description This circumpolar dataset of the comatulid (Echinodermata: Crinoidea) Promachocrinus kerguelensis (Carpenter, 1888) from the Southern Ocean, documents biodiversity associated with the specimens sequenced in Hemery et al. (2012). The aim of Hemery et al. (2012) paper was to use phylogeographic and phylogenetic tools to assess the genetic diversity, demographic history and evolutionary relationships of this very common and abundant comatulid, in the context of the glacial history of the Antarctic and Sub-Antarctic shelves (Thatje et al. 2005, 2008). Over one thousand three hundred specimens (1307) used in this study were collected during seventeen cruises from 1996 to 2010, in eight regions of the Southern Ocean: Kerguelen Plateau, Davis Sea, Dumont d'Urville Sea, Ross Sea, Amundsen Sea, West Antarctic Peninsula, East Weddell Sea and Scotia Arc including the tip of the Antarctic Peninsula and the Bransfield Strait. We give here the metadata of this dataset, which lists sampling sources (cruise ID, ship name, sampling date, sampling gear), sampling sites (station, geographic coordinates, depth) and genetic data (phylogroup, haplotype, sequence ID) for each of the 1307 specimens. The identification of the specimens was controlled by an expert taxonomist specialist of crinoids (Marc Eleaume, Museum national d'Histoire naturelle, Paris) and all the COI sequences were matched against those available on the Barcode of Life Data System (BOLD: http://www.boldsystems.org/index.php/ IDS_OpenIdEngine). This dataset can be used by studies dealing with, among other interests, Antarctic and/or crinoid diversity ( species richness, distribution patterns), biogeography or habitat / ecological niche modeling. This dataset is accessible through the GBIF network at http://ipt.biodiversity.aq/resource.do?r=proke.
format Article in Journal/Newspaper
author Hemery, Lenaig G.
Ameziane, Nadia
Eleaume, Marc
author_facet Hemery, Lenaig G.
Ameziane, Nadia
Eleaume, Marc
author_sort Hemery, Lenaig G.
title Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_short Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_full Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_fullStr Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_full_unstemmed Circumpolar dataset of sequenced specimens of Promachocrinus kerguelensis (Echinodermata, Crinoidea)
title_sort circumpolar dataset of sequenced specimens of promachocrinus kerguelensis (echinodermata, crinoidea)
publisher Pensoft Publ
publishDate 2013
url https://archimer.ifremer.fr/doc/00296/40758/39749.pdf
https://doi.org/10.3897/zookeys.315.5673
https://archimer.ifremer.fr/doc/00296/40758/
long_lat ENVELOPE(140.000,140.000,-65.000,-65.000)
ENVELOPE(93.500,93.500,-66.000,-66.000)
ENVELOPE(140.017,140.017,-66.667,-66.667)
ENVELOPE(140.013,140.013,-66.667,-66.667)
geographic Amundsen Sea
Antarctic
Antarctic Peninsula
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont d'Urville
Dumont-d'Urville
Kerguelen
Ross Sea
Southern Ocean
The Antarctic
Weddell
Weddell Sea
geographic_facet Amundsen Sea
Antarctic
Antarctic Peninsula
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont d'Urville
Dumont-d'Urville
Kerguelen
Ross Sea
Southern Ocean
The Antarctic
Weddell
Weddell Sea
genre Amundsen Sea
Antarc*
Antarctic
Antarctic Peninsula
Antarctica
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont D'Urville Sea
Ross Sea
Southern Ocean
Weddell Sea
genre_facet Amundsen Sea
Antarc*
Antarctic
Antarctic Peninsula
Antarctica
Bransfield Strait
D'Urville Sea
Davis Sea
Dumont D'Urville Sea
Ross Sea
Southern Ocean
Weddell Sea
op_source Zookeys (1313-2989) (Pensoft Publ), 2013-07-04 , N. 315 , P. 55-64
op_relation https://archimer.ifremer.fr/doc/00296/40758/39749.pdf
doi:10.3897/zookeys.315.5673
https://archimer.ifremer.fr/doc/00296/40758/
op_rights Copyright Lenaïg G. Hemery et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
info:eu-repo/semantics/openAccess
restricted use
op_rightsnorm CC-BY
op_doi https://doi.org/10.3897/zookeys.315.5673
container_title ZooKeys
container_volume 315
container_start_page 55
op_container_end_page 64
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