Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)
The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision)...
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ftanucanberra:oai:openresearch-repository.anu.edu.au:1885/202828 2024-01-14T10:10:05+01:00 Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) Fordham, Barry Aze, Tracy Haller, Christian Zehady, Abdullah Pearson, Paul Ogg, James G Wade, Bridget S application/pdf http://hdl.handle.net/1885/202828 https://doi.org/10.1371/journal.pone.0204625 https://openresearch-repository.anu.edu.au/bitstream/1885/202828/5/01_Fordham_Future-proofing_the_Cenozoic_2018.pdf.jpg en_AU eng Public Library of Science 1932-6203 http://hdl.handle.net/1885/202828 doi:10.1371/journal.pone.0204625 https://openresearch-repository.anu.edu.au/bitstream/1885/202828/5/01_Fordham_Future-proofing_the_Cenozoic_2018.pdf.jpg © 2018 Fordham et al. http://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution License PLOS ONE Journal article ftanucanberra https://doi.org/10.1371/journal.pone.0204625 2023-12-15T09:38:04Z The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has been specification of time scales for sources of stratigraphic ranges; these scales then locate the range dates within the calibration series. Some ranges or their sources have undergone mostly minor corrections or amendments. Links between lineage and morphospecies trees have been introduced to improve consistency and transparency in timing within the trees. Also, Aze & others’ dual employment of morphospecies and lineage concepts is further elaborated here, given misunderstandings that have ensued. Features displayed on the trees include options for line styles for additional categories for range extensions or degrees of support for ancestor–descendant proposals; these have been applied to a small number of instances as an encouragement to capture more nuanced data in the future. In addition to labeling of eco- and morpho-groups on both trees, genus labels can be attached to the morphospecies tree to warn of polyphyletic morphogenera, and the lineage codes have been decoded to ease their recognition. However, it is the mouse-over pop-ups that provide the greatest opportunity to embed supporting information in the trees. They include details for stratigraphic ranges and their recalibration steps, positions relative to the standard planktonic-foraminiferal zonation, and applications as datums, as well as ... Article in Journal/Newspaper Planktonic foraminifera Australian National University: ANU Digital Collections PLOS ONE 13 10 e0204625 |
institution |
Open Polar |
collection |
Australian National University: ANU Digital Collections |
op_collection_id |
ftanucanberra |
language |
English |
description |
The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has been specification of time scales for sources of stratigraphic ranges; these scales then locate the range dates within the calibration series. Some ranges or their sources have undergone mostly minor corrections or amendments. Links between lineage and morphospecies trees have been introduced to improve consistency and transparency in timing within the trees. Also, Aze & others’ dual employment of morphospecies and lineage concepts is further elaborated here, given misunderstandings that have ensued. Features displayed on the trees include options for line styles for additional categories for range extensions or degrees of support for ancestor–descendant proposals; these have been applied to a small number of instances as an encouragement to capture more nuanced data in the future. In addition to labeling of eco- and morpho-groups on both trees, genus labels can be attached to the morphospecies tree to warn of polyphyletic morphogenera, and the lineage codes have been decoded to ease their recognition. However, it is the mouse-over pop-ups that provide the greatest opportunity to embed supporting information in the trees. They include details for stratigraphic ranges and their recalibration steps, positions relative to the standard planktonic-foraminiferal zonation, and applications as datums, as well as ... |
format |
Article in Journal/Newspaper |
author |
Fordham, Barry Aze, Tracy Haller, Christian Zehady, Abdullah Pearson, Paul Ogg, James G Wade, Bridget S |
spellingShingle |
Fordham, Barry Aze, Tracy Haller, Christian Zehady, Abdullah Pearson, Paul Ogg, James G Wade, Bridget S Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) |
author_facet |
Fordham, Barry Aze, Tracy Haller, Christian Zehady, Abdullah Pearson, Paul Ogg, James G Wade, Bridget S |
author_sort |
Fordham, Barry |
title |
Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) |
title_short |
Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) |
title_full |
Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) |
title_fullStr |
Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) |
title_full_unstemmed |
Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) |
title_sort |
future-proofing the cenozoic macroperforate planktonic foraminifera phylogeny of aze & others (2011) |
publisher |
Public Library of Science |
url |
http://hdl.handle.net/1885/202828 https://doi.org/10.1371/journal.pone.0204625 https://openresearch-repository.anu.edu.au/bitstream/1885/202828/5/01_Fordham_Future-proofing_the_Cenozoic_2018.pdf.jpg |
genre |
Planktonic foraminifera |
genre_facet |
Planktonic foraminifera |
op_source |
PLOS ONE |
op_relation |
1932-6203 http://hdl.handle.net/1885/202828 doi:10.1371/journal.pone.0204625 https://openresearch-repository.anu.edu.au/bitstream/1885/202828/5/01_Fordham_Future-proofing_the_Cenozoic_2018.pdf.jpg |
op_rights |
© 2018 Fordham et al. http://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution License |
op_doi |
https://doi.org/10.1371/journal.pone.0204625 |
container_title |
PLOS ONE |
container_volume |
13 |
container_issue |
10 |
container_start_page |
e0204625 |
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1788064700083208192 |