Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas)
Protein compositions of the Pacific oyster extracts were identified through bottom-up mass spectrometry approach. The proteins were separated on an SDS-PAGE gel, cut into small pieces and tryptic digested (Fig 3A). The peptide mixtures were then subjected to LC-MS/MS analysis generating a total of 8...
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ftands:oai:ands.org.au::815652 2024-09-15T18:03:13+00:00 Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas) Ludwig Ludwig Lopata (hasAssociationWith) Ludwig Ludwig Lopata (hasCollector) Roni Benjamin Krieser (hasAssociationWith) Roni Benjamin Krieser (hasCollector) Sandip Kamath (hasCollector) Sandip Kamath (hasAssociationWith) Temporal: From 2017-08-23 https://researchdata.edu.au/proteome-raw-heated-crassostrea-gigas/815652 https://researchdata.jcu.edu.au//published/8a0dc4110b405eac8e6e7be6400f1576 https://doi.org/10.4225/28/588eb674aa910 unknown James Cook University https://researchdata.edu.au/proteome-raw-heated-crassostrea-gigas/815652 760de7722ad0ffe4c05ded6986681fb5 https://researchdata.jcu.edu.au//published/8a0dc4110b405eac8e6e7be6400f1576 doi:10.4225/28/588eb674aa910 https://researchdata.jcu.edu.au// Pacific oyster proteome mass spectrometry dataset ftands https://doi.org/10.4225/28/588eb674aa910 2024-08-27T00:01:57Z Protein compositions of the Pacific oyster extracts were identified through bottom-up mass spectrometry approach. The proteins were separated on an SDS-PAGE gel, cut into small pieces and tryptic digested (Fig 3A). The peptide mixtures were then subjected to LC-MS/MS analysis generating a total of 81831 spectra for the raw extract and 88130 spectra for the heated extract. Mascot searches were conducted against Pacific oyster proteomes, and the identified proteins were validated by Scaffold (version Scaffold_4.7.3) using criteria at least two peptides at a 99.0% probability. In total Scaffold identified 1,086 proteins from raw extract and 130 proteins from the heated extract, with 103 proteins are shared between the two extracts. This dataset consists of a spreadsheet in MS Excel (.xlsx) and Open Document formats (.ods) These datasets contain proteins identified by mass spectrometry in the raw and the heated sample of Pacific oyster (C. gigas) Dataset Crassostrea gigas Pacific oyster Research Data Australia (Australian National Data Service - ANDS) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
Pacific oyster proteome mass spectrometry |
spellingShingle |
Pacific oyster proteome mass spectrometry Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas) |
topic_facet |
Pacific oyster proteome mass spectrometry |
description |
Protein compositions of the Pacific oyster extracts were identified through bottom-up mass spectrometry approach. The proteins were separated on an SDS-PAGE gel, cut into small pieces and tryptic digested (Fig 3A). The peptide mixtures were then subjected to LC-MS/MS analysis generating a total of 81831 spectra for the raw extract and 88130 spectra for the heated extract. Mascot searches were conducted against Pacific oyster proteomes, and the identified proteins were validated by Scaffold (version Scaffold_4.7.3) using criteria at least two peptides at a 99.0% probability. In total Scaffold identified 1,086 proteins from raw extract and 130 proteins from the heated extract, with 103 proteins are shared between the two extracts. This dataset consists of a spreadsheet in MS Excel (.xlsx) and Open Document formats (.ods) These datasets contain proteins identified by mass spectrometry in the raw and the heated sample of Pacific oyster (C. gigas) |
author2 |
Ludwig Ludwig Lopata (hasAssociationWith) Ludwig Ludwig Lopata (hasCollector) Roni Benjamin Krieser (hasAssociationWith) Roni Benjamin Krieser (hasCollector) Sandip Kamath (hasCollector) Sandip Kamath (hasAssociationWith) |
format |
Dataset |
title |
Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas) |
title_short |
Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas) |
title_full |
Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas) |
title_fullStr |
Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas) |
title_full_unstemmed |
Proteome data of the raw and the heated Pacific oyster (Crassostrea gigas) |
title_sort |
proteome data of the raw and the heated pacific oyster (crassostrea gigas) |
publisher |
James Cook University |
url |
https://researchdata.edu.au/proteome-raw-heated-crassostrea-gigas/815652 https://researchdata.jcu.edu.au//published/8a0dc4110b405eac8e6e7be6400f1576 https://doi.org/10.4225/28/588eb674aa910 |
op_coverage |
Temporal: From 2017-08-23 |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_source |
https://researchdata.jcu.edu.au// |
op_relation |
https://researchdata.edu.au/proteome-raw-heated-crassostrea-gigas/815652 760de7722ad0ffe4c05ded6986681fb5 https://researchdata.jcu.edu.au//published/8a0dc4110b405eac8e6e7be6400f1576 doi:10.4225/28/588eb674aa910 |
op_doi |
https://doi.org/10.4225/28/588eb674aa910 |
_version_ |
1810440738791489536 |