Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data
This dataset contains the following information with regards to the Ecotox Project: General location and sampling date metadata. Soil characteristic analysis such as grain size, etc. Full breakdown of TPH (Total Petroleum Hydrocarbon) analysis generated through GC (Gas Chromatography) which includes...
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Australian Antarctic Data Centre
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Online Access: | https://researchdata.ands.org.au/operational-taxonomic-unit-otu-abundance/699472 https://doi.org/10.4225/15/54FFBE1DE34DF https://data.aad.gov.au/metadata/records/ASAC_1163_Ecotox http://nla.gov.au/nla.party-617536 |
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ftands:oai:ands.org.au::699472 2023-05-15T13:46:57+02:00 Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data SNAPE, IAN (hasPrincipalInvestigator) SNAPE, IAN (processor) SICILIANO, STEVEN (hasPrincipalInvestigator) SICILIANO, STEVEN (processor) WINSLEY, TRISTROM (processor) VAN DORST, JOSIE (processor) JI, MUKAN (processor) PALMER, ANNE (processor) LAGEREWSKIJ, GREG (processor) Australian Antarctic Data Centre (publisher) Spatial: northlimit=-66.2333; southlimit=-66.47; westlimit=110.3; eastLimit=110.75; projection=WGS84 Spatial: northlimit=-54.48; southlimit=-54.79; westlimit=158.76; eastLimit=158.965; projection=WGS84 Spatial: northlimit=80.0; southlimit=40.0; westlimit=-160.0; eastLimit=30.0; projection=WGS84 Temporal: From 2005-01-01 to 2011-12-31 https://researchdata.ands.org.au/operational-taxonomic-unit-otu-abundance/699472 https://doi.org/10.4225/15/54FFBE1DE34DF https://data.aad.gov.au/metadata/records/ASAC_1163_Ecotox http://nla.gov.au/nla.party-617536 unknown Australian Antarctic Data Centre https://researchdata.ands.org.au/operational-taxonomic-unit-otu-abundance/699472 ca44800b-f7bc-447f-9570-167b0a997f63 doi:10.4225/15/54FFBE1DE34DF ASAC_1163_Ecotox https://data.aad.gov.au/metadata/records/ASAC_1163_Ecotox http://nla.gov.au/nla.party-617536 Australian Antarctic Data Centre environment CONTAMINANT LEVELS/SPILLS EARTH SCIENCE HUMAN DIMENSIONS ENVIRONMENTAL IMPACTS EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > CONTAMINANTS > PETROLEUM HYDROCARBONS SOILS LAND SURFACE SOIL CHEMISTRY TPH Total petroleum hydrocarbons CEC Cation exchange capacity XRF X-ray fluorescence GC Gas Chromatography GAS CHROMATOGRAPHS FIELD INVESTIGATION FIELD SURVEYS LABORATORY CONTINENT > NORTH AMERICA > UNITED STATES OF AMERICA > ALASKA ANTARCTICA CANADA EUROPE > NORTHERN EUROPE > SCANDINAVIA > FINLAND GREENLAND ICELAND MINNESOTA CANADA > NEWFOUNDLAND AND LABRADOR NORTHWEST TERRITORIES NORWAY NUNAVUT GEOGRAPHIC REGION > POLAR QUEBEC SWEDEN UNITED STATES OF AMERICA YUKON TERRITORY OCEAN > SOUTHERN OCEAN > MACQUARIE ISLAND dataset ftands https://doi.org/10.4225/15/54FFBE1DE34DF 2020-01-05T21:16:19Z This dataset contains the following information with regards to the Ecotox Project: General location and sampling date metadata. Soil characteristic analysis such as grain size, etc. Full breakdown of TPH (Total Petroleum Hydrocarbon) analysis generated through GC (Gas Chromatography) which includes individual compounds, ranges and ratios. Dry matter fraction and loss on ignition. Chemistry via water extraction, bicarb extraction and KCl extraction. CEC (Cation Exchange Capacity) exchangeable ion analysis. XRF (X-Ray Fluorescence) analysis Abundance matrices: This dataset contains information obtained by pyrosequencing genomic DNA extracts from soil with PCR primers targeting the bacterial 16S gene (27F/519R) and fungal ITS region (ITS1/ITS4-B). The data was processed in a pipeline using freely available 'mothur' software (v1.24.1). The reads were processed in 4 ways, this was a combination of subsampling the data to a number that normalised all but the 10 lowest samples and excluding operational taxonomic units (OTUs) that only occurred once in the entire dataset. This resulted in designations FULL_READS for the unsubsampled analyses, and SUBSAMPLED for those subsampled. For each of these combinations an OTU abundance matrix was generated which is a table of OTU by samples and the corresponding abundance of the OTU. Dataset Antarc* Antarctica Greenland Iceland Macquarie Island Newfoundland Northwest Territories Nunavut Southern Ocean Alaska Yukon Research Data Australia (Australian National Data Service - ANDS) Newfoundland Southern Ocean Nunavut Yukon Northwest Territories Canada Greenland Norway Casey Station ENVELOPE(110.528,110.528,-66.282,-66.282) ENVELOPE(110.3,110.75,-66.2333,-66.47) ENVELOPE(158.76,158.965,-54.48,-54.79) ENVELOPE(-160.0,30.0,80.0,40.0) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
environment CONTAMINANT LEVELS/SPILLS EARTH SCIENCE HUMAN DIMENSIONS ENVIRONMENTAL IMPACTS EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > CONTAMINANTS > PETROLEUM HYDROCARBONS SOILS LAND SURFACE SOIL CHEMISTRY TPH Total petroleum hydrocarbons CEC Cation exchange capacity XRF X-ray fluorescence GC Gas Chromatography GAS CHROMATOGRAPHS FIELD INVESTIGATION FIELD SURVEYS LABORATORY CONTINENT > NORTH AMERICA > UNITED STATES OF AMERICA > ALASKA ANTARCTICA CANADA EUROPE > NORTHERN EUROPE > SCANDINAVIA > FINLAND GREENLAND ICELAND MINNESOTA CANADA > NEWFOUNDLAND AND LABRADOR NORTHWEST TERRITORIES NORWAY NUNAVUT GEOGRAPHIC REGION > POLAR QUEBEC SWEDEN UNITED STATES OF AMERICA YUKON TERRITORY OCEAN > SOUTHERN OCEAN > MACQUARIE ISLAND |
spellingShingle |
environment CONTAMINANT LEVELS/SPILLS EARTH SCIENCE HUMAN DIMENSIONS ENVIRONMENTAL IMPACTS EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > CONTAMINANTS > PETROLEUM HYDROCARBONS SOILS LAND SURFACE SOIL CHEMISTRY TPH Total petroleum hydrocarbons CEC Cation exchange capacity XRF X-ray fluorescence GC Gas Chromatography GAS CHROMATOGRAPHS FIELD INVESTIGATION FIELD SURVEYS LABORATORY CONTINENT > NORTH AMERICA > UNITED STATES OF AMERICA > ALASKA ANTARCTICA CANADA EUROPE > NORTHERN EUROPE > SCANDINAVIA > FINLAND GREENLAND ICELAND MINNESOTA CANADA > NEWFOUNDLAND AND LABRADOR NORTHWEST TERRITORIES NORWAY NUNAVUT GEOGRAPHIC REGION > POLAR QUEBEC SWEDEN UNITED STATES OF AMERICA YUKON TERRITORY OCEAN > SOUTHERN OCEAN > MACQUARIE ISLAND Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data |
topic_facet |
environment CONTAMINANT LEVELS/SPILLS EARTH SCIENCE HUMAN DIMENSIONS ENVIRONMENTAL IMPACTS EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > WATER QUALITY/WATER CHEMISTRY > CONTAMINANTS > PETROLEUM HYDROCARBONS SOILS LAND SURFACE SOIL CHEMISTRY TPH Total petroleum hydrocarbons CEC Cation exchange capacity XRF X-ray fluorescence GC Gas Chromatography GAS CHROMATOGRAPHS FIELD INVESTIGATION FIELD SURVEYS LABORATORY CONTINENT > NORTH AMERICA > UNITED STATES OF AMERICA > ALASKA ANTARCTICA CANADA EUROPE > NORTHERN EUROPE > SCANDINAVIA > FINLAND GREENLAND ICELAND MINNESOTA CANADA > NEWFOUNDLAND AND LABRADOR NORTHWEST TERRITORIES NORWAY NUNAVUT GEOGRAPHIC REGION > POLAR QUEBEC SWEDEN UNITED STATES OF AMERICA YUKON TERRITORY OCEAN > SOUTHERN OCEAN > MACQUARIE ISLAND |
description |
This dataset contains the following information with regards to the Ecotox Project: General location and sampling date metadata. Soil characteristic analysis such as grain size, etc. Full breakdown of TPH (Total Petroleum Hydrocarbon) analysis generated through GC (Gas Chromatography) which includes individual compounds, ranges and ratios. Dry matter fraction and loss on ignition. Chemistry via water extraction, bicarb extraction and KCl extraction. CEC (Cation Exchange Capacity) exchangeable ion analysis. XRF (X-Ray Fluorescence) analysis Abundance matrices: This dataset contains information obtained by pyrosequencing genomic DNA extracts from soil with PCR primers targeting the bacterial 16S gene (27F/519R) and fungal ITS region (ITS1/ITS4-B). The data was processed in a pipeline using freely available 'mothur' software (v1.24.1). The reads were processed in 4 ways, this was a combination of subsampling the data to a number that normalised all but the 10 lowest samples and excluding operational taxonomic units (OTUs) that only occurred once in the entire dataset. This resulted in designations FULL_READS for the unsubsampled analyses, and SUBSAMPLED for those subsampled. For each of these combinations an OTU abundance matrix was generated which is a table of OTU by samples and the corresponding abundance of the OTU. |
author2 |
SNAPE, IAN (hasPrincipalInvestigator) SNAPE, IAN (processor) SICILIANO, STEVEN (hasPrincipalInvestigator) SICILIANO, STEVEN (processor) WINSLEY, TRISTROM (processor) VAN DORST, JOSIE (processor) JI, MUKAN (processor) PALMER, ANNE (processor) LAGEREWSKIJ, GREG (processor) Australian Antarctic Data Centre (publisher) |
format |
Dataset |
title |
Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data |
title_short |
Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data |
title_full |
Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data |
title_fullStr |
Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data |
title_full_unstemmed |
Operational Taxonomic Unit (OTU) Microbial Ecotoxicology data from Macquarie Island and Casey Station: TPH, Chemistry and OTU Abundance data |
title_sort |
operational taxonomic unit (otu) microbial ecotoxicology data from macquarie island and casey station: tph, chemistry and otu abundance data |
publisher |
Australian Antarctic Data Centre |
url |
https://researchdata.ands.org.au/operational-taxonomic-unit-otu-abundance/699472 https://doi.org/10.4225/15/54FFBE1DE34DF https://data.aad.gov.au/metadata/records/ASAC_1163_Ecotox http://nla.gov.au/nla.party-617536 |
op_coverage |
Spatial: northlimit=-66.2333; southlimit=-66.47; westlimit=110.3; eastLimit=110.75; projection=WGS84 Spatial: northlimit=-54.48; southlimit=-54.79; westlimit=158.76; eastLimit=158.965; projection=WGS84 Spatial: northlimit=80.0; southlimit=40.0; westlimit=-160.0; eastLimit=30.0; projection=WGS84 Temporal: From 2005-01-01 to 2011-12-31 |
long_lat |
ENVELOPE(110.528,110.528,-66.282,-66.282) ENVELOPE(110.3,110.75,-66.2333,-66.47) ENVELOPE(158.76,158.965,-54.48,-54.79) ENVELOPE(-160.0,30.0,80.0,40.0) |
geographic |
Newfoundland Southern Ocean Nunavut Yukon Northwest Territories Canada Greenland Norway Casey Station |
geographic_facet |
Newfoundland Southern Ocean Nunavut Yukon Northwest Territories Canada Greenland Norway Casey Station |
genre |
Antarc* Antarctica Greenland Iceland Macquarie Island Newfoundland Northwest Territories Nunavut Southern Ocean Alaska Yukon |
genre_facet |
Antarc* Antarctica Greenland Iceland Macquarie Island Newfoundland Northwest Territories Nunavut Southern Ocean Alaska Yukon |
op_source |
Australian Antarctic Data Centre |
op_relation |
https://researchdata.ands.org.au/operational-taxonomic-unit-otu-abundance/699472 ca44800b-f7bc-447f-9570-167b0a997f63 doi:10.4225/15/54FFBE1DE34DF ASAC_1163_Ecotox https://data.aad.gov.au/metadata/records/ASAC_1163_Ecotox http://nla.gov.au/nla.party-617536 |
op_doi |
https://doi.org/10.4225/15/54FFBE1DE34DF |
_version_ |
1766245827680927744 |