RNA sequence data from krill CO2 exposure experiment
We use RNA sequencing to investigate which genetic/physiological pathways in Antarctic krill are affected by increased CO2 levels. We carried out larval CO2 exposure experiments in March 2012 at the AAD aquarium. Two developmental stages were used (Calyptopis I and Furcilia V) and three CO2 levels (...
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Australian Antarctic Data Centre
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Online Access: | https://researchdata.ands.org.au/rna-sequence-krill-exposure-experiment/698945 https://doi.org/10.4225/15/5775D60F1CB0D https://data.aad.gov.au/metadata/records/AAS_4015_krill_RNA http://nla.gov.au/nla.party-617536 |
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ftands:oai:ands.org.au::698945 2023-05-15T13:46:57+02:00 RNA sequence data from krill CO2 exposure experiment DEAGLE, BRUCE (hasPrincipalInvestigator) DEAGLE, BRUCE (processor) Australian Antarctic Data Centre (publisher) Spatial: northlimit=-42.98550; southlimit=-42.98792; westlimit=147.29014; eastLimit=147.29396; projection=WGS84 Temporal: From 2012-03-01 to 2012-09-30 https://researchdata.ands.org.au/rna-sequence-krill-exposure-experiment/698945 https://doi.org/10.4225/15/5775D60F1CB0D https://data.aad.gov.au/metadata/records/AAS_4015_krill_RNA http://nla.gov.au/nla.party-617536 unknown Australian Antarctic Data Centre https://researchdata.ands.org.au/rna-sequence-krill-exposure-experiment/698945 837d5822-51b3-4e44-81d8-a641cf0ec261 doi:10.4225/15/5775D60F1CB0D AAS_4015_krill_RNA https://data.aad.gov.au/metadata/records/AAS_4015_krill_RNA http://nla.gov.au/nla.party-617536 Australian Antarctic Data Centre biota environment oceans EUPHAUSIIDS (KRILL) EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/INVERTEBRATES ARTHROPODS CRUSTACEANS CARBON DIOXIDE OCEAN CHEMISTRY OCEAN ACIDIFICATION RNA GENETICS ADS > Automated DNA Sequencer LABORATORY GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA OCEAN > SOUTHERN OCEAN AUSTRALIA/NEW ZEALAND > AUSTRALIA dataset ftands https://doi.org/10.4225/15/5775D60F1CB0D 2020-01-05T21:15:41Z We use RNA sequencing to investigate which genetic/physiological pathways in Antarctic krill are affected by increased CO2 levels. We carried out larval CO2 exposure experiments in March 2012 at the AAD aquarium. Two developmental stages were used (Calyptopis I and Furcilia V) and three CO2 levels (control, 1000 and 2000 ppm). These were short term experiments (2 days) - since initial longer experiments starting with fertilized eggs resulted in differences in developmental stages between treatments and control which could confound the data. RNA was extracted from larvae and high-throughput RNA sequencing (RNA-seq) was carried out on 6 samples (2 stages * 3 treatments). Sequencing was carried out on an Illumina sequencer (Genome Analyzer II). We collected ~ 60 million sequence reads per sample (Data in FASTA format each read gives 100 base pairs of sequence), so a total of ~360 million reads (36 billion bp of data). Dataset Antarc* Antarctic Antarctic Krill Antarctica Ocean acidification Southern Ocean Research Data Australia (Australian National Data Service - ANDS) Antarctic New Zealand Southern Ocean ENVELOPE(147.29014,147.29396,-42.98550,-42.98792) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
biota environment oceans EUPHAUSIIDS (KRILL) EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/INVERTEBRATES ARTHROPODS CRUSTACEANS CARBON DIOXIDE OCEAN CHEMISTRY OCEAN ACIDIFICATION RNA GENETICS ADS > Automated DNA Sequencer LABORATORY GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA OCEAN > SOUTHERN OCEAN AUSTRALIA/NEW ZEALAND > AUSTRALIA |
spellingShingle |
biota environment oceans EUPHAUSIIDS (KRILL) EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/INVERTEBRATES ARTHROPODS CRUSTACEANS CARBON DIOXIDE OCEAN CHEMISTRY OCEAN ACIDIFICATION RNA GENETICS ADS > Automated DNA Sequencer LABORATORY GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA OCEAN > SOUTHERN OCEAN AUSTRALIA/NEW ZEALAND > AUSTRALIA RNA sequence data from krill CO2 exposure experiment |
topic_facet |
biota environment oceans EUPHAUSIIDS (KRILL) EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/INVERTEBRATES ARTHROPODS CRUSTACEANS CARBON DIOXIDE OCEAN CHEMISTRY OCEAN ACIDIFICATION RNA GENETICS ADS > Automated DNA Sequencer LABORATORY GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA OCEAN > SOUTHERN OCEAN AUSTRALIA/NEW ZEALAND > AUSTRALIA |
description |
We use RNA sequencing to investigate which genetic/physiological pathways in Antarctic krill are affected by increased CO2 levels. We carried out larval CO2 exposure experiments in March 2012 at the AAD aquarium. Two developmental stages were used (Calyptopis I and Furcilia V) and three CO2 levels (control, 1000 and 2000 ppm). These were short term experiments (2 days) - since initial longer experiments starting with fertilized eggs resulted in differences in developmental stages between treatments and control which could confound the data. RNA was extracted from larvae and high-throughput RNA sequencing (RNA-seq) was carried out on 6 samples (2 stages * 3 treatments). Sequencing was carried out on an Illumina sequencer (Genome Analyzer II). We collected ~ 60 million sequence reads per sample (Data in FASTA format each read gives 100 base pairs of sequence), so a total of ~360 million reads (36 billion bp of data). |
author2 |
DEAGLE, BRUCE (hasPrincipalInvestigator) DEAGLE, BRUCE (processor) Australian Antarctic Data Centre (publisher) |
format |
Dataset |
title |
RNA sequence data from krill CO2 exposure experiment |
title_short |
RNA sequence data from krill CO2 exposure experiment |
title_full |
RNA sequence data from krill CO2 exposure experiment |
title_fullStr |
RNA sequence data from krill CO2 exposure experiment |
title_full_unstemmed |
RNA sequence data from krill CO2 exposure experiment |
title_sort |
rna sequence data from krill co2 exposure experiment |
publisher |
Australian Antarctic Data Centre |
url |
https://researchdata.ands.org.au/rna-sequence-krill-exposure-experiment/698945 https://doi.org/10.4225/15/5775D60F1CB0D https://data.aad.gov.au/metadata/records/AAS_4015_krill_RNA http://nla.gov.au/nla.party-617536 |
op_coverage |
Spatial: northlimit=-42.98550; southlimit=-42.98792; westlimit=147.29014; eastLimit=147.29396; projection=WGS84 Temporal: From 2012-03-01 to 2012-09-30 |
long_lat |
ENVELOPE(147.29014,147.29396,-42.98550,-42.98792) |
geographic |
Antarctic New Zealand Southern Ocean |
geographic_facet |
Antarctic New Zealand Southern Ocean |
genre |
Antarc* Antarctic Antarctic Krill Antarctica Ocean acidification Southern Ocean |
genre_facet |
Antarc* Antarctic Antarctic Krill Antarctica Ocean acidification Southern Ocean |
op_source |
Australian Antarctic Data Centre |
op_relation |
https://researchdata.ands.org.au/rna-sequence-krill-exposure-experiment/698945 837d5822-51b3-4e44-81d8-a641cf0ec261 doi:10.4225/15/5775D60F1CB0D AAS_4015_krill_RNA https://data.aad.gov.au/metadata/records/AAS_4015_krill_RNA http://nla.gov.au/nla.party-617536 |
op_doi |
https://doi.org/10.4225/15/5775D60F1CB0D |
_version_ |
1766245788052094976 |