V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data
Progress Code: onGoing In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genet...
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Australian Ocean Data Network
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ftands:oai:ands.org.au::2821845 2024-09-15T17:56:42+00:00 V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) POLANOWSKI, ANDREA (hasPrincipalInvestigator) SUTER, LEONIE (hasPrincipalInvestigator) Spatial: westlimit=147.4907331; southlimit=-54.7560595; eastlimit=158.909247; northlimit=-43.6789173 Temporal: From 2018-03-09 to 2018-03-24 https://researchdata.edu.au/v4-2018-edna-sequencing-data/2821845 unknown Australian Ocean Data Network https://researchdata.edu.au/v4-2018-edna-sequencing-data/2821845 AAS_4556_V4_eDNA_data AU/AADC > Australian Antarctic Data Centre, Australia oceans biota EARTH SCIENCE > OCEANS > MARINE ENVIRONMENT MONITORING BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON ENVIRONMENTAL DNA METABARCODING BIOMONITORING CPR > Continuous Plankton Recorder ADS > Automated DNA Sequencer R/V AA > R/V Aurora Australis LABORATORY ACE/CRC AMD AMD/AU CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN dataset ftands 2024-08-06T01:58:58Z Progress Code: onGoing In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were collected. All samples were sequenced with a metazoan specific cytochrome c oxidase I marker (folder "2018_08_28 eDNA V4 COI" contains all genetic CPR and small volume eDNA samples, folder "2019_05_08_eDNA_V4_CBR_Repeats_COI" contains some repeated small volume eDNA samples and all large volume eDNA samples (also called CBR samples)). Additionally, all eDNA samples were sequenced using an 18S rRNA marker (folder "2018_09_19 eDNA V4 18s Ramaciotti") to assess overall biodiversity. Each folder contains the raw sequencing data (fastq format) as well as data indexes and readme files. Please contact us if you are planning on using this data (leonie.suter@aad.gov.au). More information about these datasets are contained in the readme files in the dataset. Dataset aurora australis Macquarie Island Southern Ocean Research Data Australia (Australian National Data Service - ANDS) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
oceans biota EARTH SCIENCE > OCEANS > MARINE ENVIRONMENT MONITORING BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON ENVIRONMENTAL DNA METABARCODING BIOMONITORING CPR > Continuous Plankton Recorder ADS > Automated DNA Sequencer R/V AA > R/V Aurora Australis LABORATORY ACE/CRC AMD AMD/AU CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN |
spellingShingle |
oceans biota EARTH SCIENCE > OCEANS > MARINE ENVIRONMENT MONITORING BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON ENVIRONMENTAL DNA METABARCODING BIOMONITORING CPR > Continuous Plankton Recorder ADS > Automated DNA Sequencer R/V AA > R/V Aurora Australis LABORATORY ACE/CRC AMD AMD/AU CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data |
topic_facet |
oceans biota EARTH SCIENCE > OCEANS > MARINE ENVIRONMENT MONITORING BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON ENVIRONMENTAL DNA METABARCODING BIOMONITORING CPR > Continuous Plankton Recorder ADS > Automated DNA Sequencer R/V AA > R/V Aurora Australis LABORATORY ACE/CRC AMD AMD/AU CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN |
description |
Progress Code: onGoing In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were collected. All samples were sequenced with a metazoan specific cytochrome c oxidase I marker (folder "2018_08_28 eDNA V4 COI" contains all genetic CPR and small volume eDNA samples, folder "2019_05_08_eDNA_V4_CBR_Repeats_COI" contains some repeated small volume eDNA samples and all large volume eDNA samples (also called CBR samples)). Additionally, all eDNA samples were sequenced using an 18S rRNA marker (folder "2018_09_19 eDNA V4 18s Ramaciotti") to assess overall biodiversity. Each folder contains the raw sequencing data (fastq format) as well as data indexes and readme files. Please contact us if you are planning on using this data (leonie.suter@aad.gov.au). More information about these datasets are contained in the readme files in the dataset. |
author2 |
AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) POLANOWSKI, ANDREA (hasPrincipalInvestigator) SUTER, LEONIE (hasPrincipalInvestigator) |
format |
Dataset |
title |
V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data |
title_short |
V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data |
title_full |
V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data |
title_fullStr |
V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data |
title_full_unstemmed |
V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data |
title_sort |
v4 2018 edna, genetic cpr and large-volume edna raw sequencing data |
publisher |
Australian Ocean Data Network |
url |
https://researchdata.edu.au/v4-2018-edna-sequencing-data/2821845 |
op_coverage |
Spatial: westlimit=147.4907331; southlimit=-54.7560595; eastlimit=158.909247; northlimit=-43.6789173 Temporal: From 2018-03-09 to 2018-03-24 |
genre |
aurora australis Macquarie Island Southern Ocean |
genre_facet |
aurora australis Macquarie Island Southern Ocean |
op_source |
AU/AADC > Australian Antarctic Data Centre, Australia |
op_relation |
https://researchdata.edu.au/v4-2018-edna-sequencing-data/2821845 AAS_4556_V4_eDNA_data |
_version_ |
1810432922582253568 |