Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses
Progress Code: completed Statement: No known quality issues. GOS stands for Global Ocean Sampling. TFF- Tangential Flow Filtration. Large volumes of water (200 - 500 L) were filtered and fractionated by size for various planktonic components: eukaryotic phytoplankton, prokaryotic picoplankton, and m...
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Online Access: | https://researchdata.edu.au/sampling-planktonic-microorganisms-metatranscriptomic-analyses/2821431 |
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ftands:oai:ands.org.au::2821431 2024-09-15T17:46:28+00:00 Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) CAVICCHIOLI, RICK (hasPrincipalInvestigator) Cavicchioli, R., Hoffman, J. and McQuaid, J. (originator) HOFFMAN, JEFF (collaborator) MCQUAID, JEFF (collaborator) MOSBAUER, ALICJA (author) Spatial: westlimit=140.0; southlimit=-67.0; eastlimit=150.0; northlimit=-46.0 Temporal: From 2007-12-17 to 2008-01-28 https://researchdata.edu.au/sampling-planktonic-microorganisms-metatranscriptomic-analyses/2821431 unknown Australian Ocean Data Network https://researchdata.edu.au/sampling-planktonic-microorganisms-metatranscriptomic-analyses/2821431 CEAMARC_CASO_200708_V3_PLANKTON_GENOMICS_PROTEOMICS AU/AADC > Australian Antarctic Data Centre, Australia biota oceans EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON > PHYTOPLANKTON SHIPS R/V AA > R/V Aurora Australis IPY > INTERNATIONAL POLAR YEAR CASO > Climate of Antarctica and the Southern Ocean AMD/AU CEOS AMD OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR dataset ftands 2024-08-06T01:58:58Z Progress Code: completed Statement: No known quality issues. GOS stands for Global Ocean Sampling. TFF- Tangential Flow Filtration. Large volumes of water (200 - 500 L) were filtered and fractionated by size for various planktonic components: eukaryotic phytoplankton, prokaryotic picoplankton, and marine viruses. Sample sites were chosen to generate the widest diversity, and included planktonic blooms, oligotrophic zones, small polynyas near sea ice, nearshore areas, and Antarctic bottom water from coastal, canyon and deepwater areas. Half of each sample will be used for DNA library construction, and the other half will be used for meta-proteomic analysis. Random shotgun sequencing of the marine genomic libraries should produce a metagenomic snapshot of planktonic life in a variety of marine habitats. This work was completed as part of ASAC project 2899 (ASAC_2899). Dataset Antarc* Antarctic Antarctica aurora australis International Polar Year IPY Sea ice Southern Ocean Research Data Australia (Australian National Data Service - ANDS) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
biota oceans EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON > PHYTOPLANKTON SHIPS R/V AA > R/V Aurora Australis IPY > INTERNATIONAL POLAR YEAR CASO > Climate of Antarctica and the Southern Ocean AMD/AU CEOS AMD OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR |
spellingShingle |
biota oceans EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON > PHYTOPLANKTON SHIPS R/V AA > R/V Aurora Australis IPY > INTERNATIONAL POLAR YEAR CASO > Climate of Antarctica and the Southern Ocean AMD/AU CEOS AMD OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses |
topic_facet |
biota oceans EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON > PHYTOPLANKTON SHIPS R/V AA > R/V Aurora Australis IPY > INTERNATIONAL POLAR YEAR CASO > Climate of Antarctica and the Southern Ocean AMD/AU CEOS AMD OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR |
description |
Progress Code: completed Statement: No known quality issues. GOS stands for Global Ocean Sampling. TFF- Tangential Flow Filtration. Large volumes of water (200 - 500 L) were filtered and fractionated by size for various planktonic components: eukaryotic phytoplankton, prokaryotic picoplankton, and marine viruses. Sample sites were chosen to generate the widest diversity, and included planktonic blooms, oligotrophic zones, small polynyas near sea ice, nearshore areas, and Antarctic bottom water from coastal, canyon and deepwater areas. Half of each sample will be used for DNA library construction, and the other half will be used for meta-proteomic analysis. Random shotgun sequencing of the marine genomic libraries should produce a metagenomic snapshot of planktonic life in a variety of marine habitats. This work was completed as part of ASAC project 2899 (ASAC_2899). |
author2 |
AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) CAVICCHIOLI, RICK (hasPrincipalInvestigator) Cavicchioli, R., Hoffman, J. and McQuaid, J. (originator) HOFFMAN, JEFF (collaborator) MCQUAID, JEFF (collaborator) MOSBAUER, ALICJA (author) |
format |
Dataset |
title |
Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses |
title_short |
Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses |
title_full |
Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses |
title_fullStr |
Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses |
title_full_unstemmed |
Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses |
title_sort |
sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses |
publisher |
Australian Ocean Data Network |
url |
https://researchdata.edu.au/sampling-planktonic-microorganisms-metatranscriptomic-analyses/2821431 |
op_coverage |
Spatial: westlimit=140.0; southlimit=-67.0; eastlimit=150.0; northlimit=-46.0 Temporal: From 2007-12-17 to 2008-01-28 |
genre |
Antarc* Antarctic Antarctica aurora australis International Polar Year IPY Sea ice Southern Ocean |
genre_facet |
Antarc* Antarctic Antarctica aurora australis International Polar Year IPY Sea ice Southern Ocean |
op_source |
AU/AADC > Australian Antarctic Data Centre, Australia |
op_relation |
https://researchdata.edu.au/sampling-planktonic-microorganisms-metatranscriptomic-analyses/2821431 CEAMARC_CASO_200708_V3_PLANKTON_GENOMICS_PROTEOMICS |
_version_ |
1810494633769172992 |