Abatus Microsatellites data set
Progress Code: completed Statement: Samples from sampling sites OF1 and OF2 were collected during the 2009/2010 summer season. Samples from sampling sites OF, OF3 and OF4 were collected during the 2012/2013 summer season. Depths at which samples were collected: OF1: 4.5-7.0 m deep OF2: 10-12 m deep...
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Australian Ocean Data Network
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Online Access: | https://researchdata.edu.au/abatus-microsatellites-set/2819226 |
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ftands:oai:ands.org.au::2819226 2024-09-15T17:45:06+00:00 Abatus Microsatellites data set AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) BURRIDGE, CHRISTOPHER (collaborator) BURRIDGE, CHRISTOPHER (hasPrincipalInvestigator) CARREA, CECILIA (collaborator) CARREA, CECILIA (hasPrincipalInvestigator) CARREA, CECILIA (author) Carrea, C., Burridge, C., King, C.K. and Miller, K. (originator) KING, CATHERINE K. (collaborator) KING, CATHERINE K. (hasPrincipalInvestigator) MILLER, KAREN (collaborator) MILLER, KAREN (hasPrincipalInvestigator) Spatial: westlimit=77.987556; southlimit=-68.584139; eastlimit=77.94931; northlimit=-68.565625 Spatial: uplimit=25; downlimit=0 Temporal: From 2009-10-01 to 2013-03-31 https://researchdata.edu.au/abatus-microsatellites-set/2819226 unknown Australian Ocean Data Network https://researchdata.edu.au/abatus-microsatellites-set/2819226 AAS_3051_AbatusMicrosatellites AU/AADC > Australian Antarctic Data Centre, Australia environment biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ECHINODERMS > SEA URCHINS HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONTAMINANT LEVELS/SPILLS OCEANS > WATER QUALITY > OCEAN CONTAMINANTS SEWAGE DISPOSAL OUTFALL PIPE - DAVIS STATION ADS > Automated DNA Sequencer FIELD INVESTIGATION FIELD SURVEYS LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR dataset ftands 2024-08-06T01:58:58Z Progress Code: completed Statement: Samples from sampling sites OF1 and OF2 were collected during the 2009/2010 summer season. Samples from sampling sites OF, OF3 and OF4 were collected during the 2012/2013 summer season. Depths at which samples were collected: OF1: 4.5-7.0 m deep OF2: 10-12 m deep OF, OF3, OF4 equal or less than 4 m deep. Original datasheet was reformatted to fit IPT Biodiversity.AQ standard. The new datasheet "AbatusUrchin_microsatellites.csv" provides the dataset ID, verbatim latitude and verbatim longitude that were converted to decimal latitude and longitude, also provided. Taxonomical organisation to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species). Also provides other parameters such as localisation, sampling depth, occurrence, and date of event. Purpose Main goal was to study and compare the fine-scale population structure and demographic history of three species of Antarctic sea urchins (Abatus ingens, Abatus shackletoni and Abatus philippii) in the near-shore area surrounding the Australian Reseach Sation Davis in East Antarctica. A secondary goal was to test potential impacts of pollution from the Davis Station wastewater discharge on the genetic diversity and effective population size of these species. The present data set corresponds to the genotypes for seven microsatellite markers for three Antarctic sea urchin species of the genus Abatus. Sea urchin individuals were collected in five sites separated by up to 5 km in the near-shore area surrounding Davis Station in the Vestfold Hills Region, East Antarctica. For each microsatellite loci, the size of each allele was scored (in base pairs) using the CEQ 8000 Genetic Analysis System software v.8.0. Fragments were separated on an automated sequencer (CEQ 8000, Beckman Coulter) in the Central Science Laboratory at University of Tasmania. Dataset Antarc* Antarctic Antarctica East Antarctica Research Data Australia (Australian National Data Service - ANDS) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
environment biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ECHINODERMS > SEA URCHINS HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONTAMINANT LEVELS/SPILLS OCEANS > WATER QUALITY > OCEAN CONTAMINANTS SEWAGE DISPOSAL OUTFALL PIPE - DAVIS STATION ADS > Automated DNA Sequencer FIELD INVESTIGATION FIELD SURVEYS LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR |
spellingShingle |
environment biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ECHINODERMS > SEA URCHINS HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONTAMINANT LEVELS/SPILLS OCEANS > WATER QUALITY > OCEAN CONTAMINANTS SEWAGE DISPOSAL OUTFALL PIPE - DAVIS STATION ADS > Automated DNA Sequencer FIELD INVESTIGATION FIELD SURVEYS LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR Abatus Microsatellites data set |
topic_facet |
environment biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ECHINODERMS > SEA URCHINS HUMAN DIMENSIONS > ENVIRONMENTAL IMPACTS > CONTAMINANT LEVELS/SPILLS OCEANS > WATER QUALITY > OCEAN CONTAMINANTS SEWAGE DISPOSAL OUTFALL PIPE - DAVIS STATION ADS > Automated DNA Sequencer FIELD INVESTIGATION FIELD SURVEYS LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR |
description |
Progress Code: completed Statement: Samples from sampling sites OF1 and OF2 were collected during the 2009/2010 summer season. Samples from sampling sites OF, OF3 and OF4 were collected during the 2012/2013 summer season. Depths at which samples were collected: OF1: 4.5-7.0 m deep OF2: 10-12 m deep OF, OF3, OF4 equal or less than 4 m deep. Original datasheet was reformatted to fit IPT Biodiversity.AQ standard. The new datasheet "AbatusUrchin_microsatellites.csv" provides the dataset ID, verbatim latitude and verbatim longitude that were converted to decimal latitude and longitude, also provided. Taxonomical organisation to the lowest taxonomical rank that could be determined, after matched in WoRMS (World Register of Marine Species). Also provides other parameters such as localisation, sampling depth, occurrence, and date of event. Purpose Main goal was to study and compare the fine-scale population structure and demographic history of three species of Antarctic sea urchins (Abatus ingens, Abatus shackletoni and Abatus philippii) in the near-shore area surrounding the Australian Reseach Sation Davis in East Antarctica. A secondary goal was to test potential impacts of pollution from the Davis Station wastewater discharge on the genetic diversity and effective population size of these species. The present data set corresponds to the genotypes for seven microsatellite markers for three Antarctic sea urchin species of the genus Abatus. Sea urchin individuals were collected in five sites separated by up to 5 km in the near-shore area surrounding Davis Station in the Vestfold Hills Region, East Antarctica. For each microsatellite loci, the size of each allele was scored (in base pairs) using the CEQ 8000 Genetic Analysis System software v.8.0. Fragments were separated on an automated sequencer (CEQ 8000, Beckman Coulter) in the Central Science Laboratory at University of Tasmania. |
author2 |
AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) BURRIDGE, CHRISTOPHER (collaborator) BURRIDGE, CHRISTOPHER (hasPrincipalInvestigator) CARREA, CECILIA (collaborator) CARREA, CECILIA (hasPrincipalInvestigator) CARREA, CECILIA (author) Carrea, C., Burridge, C., King, C.K. and Miller, K. (originator) KING, CATHERINE K. (collaborator) KING, CATHERINE K. (hasPrincipalInvestigator) MILLER, KAREN (collaborator) MILLER, KAREN (hasPrincipalInvestigator) |
format |
Dataset |
title |
Abatus Microsatellites data set |
title_short |
Abatus Microsatellites data set |
title_full |
Abatus Microsatellites data set |
title_fullStr |
Abatus Microsatellites data set |
title_full_unstemmed |
Abatus Microsatellites data set |
title_sort |
abatus microsatellites data set |
publisher |
Australian Ocean Data Network |
url |
https://researchdata.edu.au/abatus-microsatellites-set/2819226 |
op_coverage |
Spatial: westlimit=77.987556; southlimit=-68.584139; eastlimit=77.94931; northlimit=-68.565625 Spatial: uplimit=25; downlimit=0 Temporal: From 2009-10-01 to 2013-03-31 |
genre |
Antarc* Antarctic Antarctica East Antarctica |
genre_facet |
Antarc* Antarctic Antarctica East Antarctica |
op_source |
AU/AADC > Australian Antarctic Data Centre, Australia |
op_relation |
https://researchdata.edu.au/abatus-microsatellites-set/2819226 AAS_3051_AbatusMicrosatellites |
_version_ |
1810492816334258176 |