SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils
Data and files associated with the manuscript: Baird et al (2021) 'Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front', published in PNAS . - Full, quality-filtered dataset of 5,859 genome-wide SNPs for the sub-Antarctic weevil Palirhoeus eatoni (Coleoptera: Curculioni...
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Online Access: | https://doi.org/10.26180/14446023 https://researchdata.edu.au/snp-dataset-analysis-ectemnorhinini-weevils/1712625 https://figshare.com/authors/Helena_Baird/6058703 |
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ftands:oai:ands.org.au::1712625 2023-05-15T13:50:39+02:00 SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils https://doi.org/10.26180/14446023 https://researchdata.edu.au/snp-dataset-analysis-ectemnorhinini-weevils/1712625 https://figshare.com/authors/Helena_Baird/6058703 unknown Monash University https://researchdata.edu.au/snp-dataset-analysis-ectemnorhinini-weevils/1712625 https://doi.org/10.26180/14446023 orcid:0000-0001-6069-5105 https://figshare.com/authors/Helena_Baird/6058703 3557783 4068637 9183616 6649245 756217 3259560 3557768 Monash University Figshare Genomic Population genetic structure island connectivity sub-Antarctic island Coleoptera systematics Weevil palaeoclimates diversification process Evolutionary Biology Animal Systematics and Taxonomy Biogeography and Phylogeography Population Ecological and Evolutionary Genetics dataset ftands https://doi.org/10.26180/14446023 2022-05-09T22:22:44Z Data and files associated with the manuscript: Baird et al (2021) 'Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front', published in PNAS . - Full, quality-filtered dataset of 5,859 genome-wide SNPs for the sub-Antarctic weevil Palirhoeus eatoni (Coleoptera: Curculionidae), provided in vcf format - A metadata spreadsheet (providing the collection details for every P. eatoni individual, corresponding to sample IDs in the SNP dataset) - R script used to filter the SNP dataset and perform basic SNP-based phylogeographic analyses - Phylogenetic trees in .newick format, both dated and undated, are provided for the sub-Antarctic Ectemnorhinini weevil tribe as inferred from concatenated COI, cytochrome b, 16S, 28S, and Elongation factor 1-alpha sequences - R script is provided for RPANDA macroevolutionary analyses, which are based on the dated phylogenetic tree generated in BEAST. - R script and input files (with prefix 'BGB') are provided for BioGeoBEARS biogeographic inference analysis - Phylogenomic trees in .nexus format are provided for representatives of the sub-Antarctic Ectemnorhinini together with a worldwide sample of Entiminae weevils, based on a concatenated dataset of 515 genes (1st and 2nd codons) Dataset Antarc* Antarctic Research Data Australia (Australian National Data Service - ANDS) Antarctic The Antarctic |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
Genomic Population genetic structure island connectivity sub-Antarctic island Coleoptera systematics Weevil palaeoclimates diversification process Evolutionary Biology Animal Systematics and Taxonomy Biogeography and Phylogeography Population Ecological and Evolutionary Genetics |
spellingShingle |
Genomic Population genetic structure island connectivity sub-Antarctic island Coleoptera systematics Weevil palaeoclimates diversification process Evolutionary Biology Animal Systematics and Taxonomy Biogeography and Phylogeography Population Ecological and Evolutionary Genetics SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils |
topic_facet |
Genomic Population genetic structure island connectivity sub-Antarctic island Coleoptera systematics Weevil palaeoclimates diversification process Evolutionary Biology Animal Systematics and Taxonomy Biogeography and Phylogeography Population Ecological and Evolutionary Genetics |
description |
Data and files associated with the manuscript: Baird et al (2021) 'Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front', published in PNAS . - Full, quality-filtered dataset of 5,859 genome-wide SNPs for the sub-Antarctic weevil Palirhoeus eatoni (Coleoptera: Curculionidae), provided in vcf format - A metadata spreadsheet (providing the collection details for every P. eatoni individual, corresponding to sample IDs in the SNP dataset) - R script used to filter the SNP dataset and perform basic SNP-based phylogeographic analyses - Phylogenetic trees in .newick format, both dated and undated, are provided for the sub-Antarctic Ectemnorhinini weevil tribe as inferred from concatenated COI, cytochrome b, 16S, 28S, and Elongation factor 1-alpha sequences - R script is provided for RPANDA macroevolutionary analyses, which are based on the dated phylogenetic tree generated in BEAST. - R script and input files (with prefix 'BGB') are provided for BioGeoBEARS biogeographic inference analysis - Phylogenomic trees in .nexus format are provided for representatives of the sub-Antarctic Ectemnorhinini together with a worldwide sample of Entiminae weevils, based on a concatenated dataset of 515 genes (1st and 2nd codons) |
format |
Dataset |
title |
SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils |
title_short |
SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils |
title_full |
SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils |
title_fullStr |
SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils |
title_full_unstemmed |
SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils |
title_sort |
snp dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-antarctic ectemnorhinini weevils |
publisher |
Monash University |
url |
https://doi.org/10.26180/14446023 https://researchdata.edu.au/snp-dataset-analysis-ectemnorhinini-weevils/1712625 https://figshare.com/authors/Helena_Baird/6058703 |
geographic |
Antarctic The Antarctic |
geographic_facet |
Antarctic The Antarctic |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_source |
Monash University Figshare |
op_relation |
https://researchdata.edu.au/snp-dataset-analysis-ectemnorhinini-weevils/1712625 https://doi.org/10.26180/14446023 orcid:0000-0001-6069-5105 https://figshare.com/authors/Helena_Baird/6058703 3557783 4068637 9183616 6649245 756217 3259560 3557768 |
op_doi |
https://doi.org/10.26180/14446023 |
_version_ |
1766253825796079616 |