SNP dataset, analysis scripts, and raw phylogenetic & phylogenomic trees for the sub-Antarctic Ectemnorhinini weevils

Data and files associated with the manuscript: Baird et al (2021) 'Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front', published in PNAS . - Full, quality-filtered dataset of 5,859 genome-wide SNPs for the sub-Antarctic weevil Palirhoeus eatoni (Coleoptera: Curculioni...

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Bibliographic Details
Format: Dataset
Language:unknown
Published: Monash University
Subjects:
Genomic
Population genetic structure
island
connectivity
sub-Antarctic island
Coleoptera systematics
Weevil
palaeoclimates
diversification process
Evolutionary Biology
Animal Systematics and Taxonomy
Biogeography and Phylogeography
Population
Ecological and Evolutionary Genetics
Antarctic
The Antarctic
Antarc*
Online Access:https://doi.org/10.26180/14446023
https://researchdata.edu.au/snp-dataset-analysis-ectemnorhinini-weevils/1712625
https://figshare.com/authors/Helena_Baird/6058703
Description
Summary:Data and files associated with the manuscript: Baird et al (2021) 'Fifty Million Years of Beetle Evolution Along the Antarctic Polar Front', published in PNAS . - Full, quality-filtered dataset of 5,859 genome-wide SNPs for the sub-Antarctic weevil Palirhoeus eatoni (Coleoptera: Curculionidae), provided in vcf format - A metadata spreadsheet (providing the collection details for every P. eatoni individual, corresponding to sample IDs in the SNP dataset) - R script used to filter the SNP dataset and perform basic SNP-based phylogeographic analyses - Phylogenetic trees in .newick format, both dated and undated, are provided for the sub-Antarctic Ectemnorhinini weevil tribe as inferred from concatenated COI, cytochrome b, 16S, 28S, and Elongation factor 1-alpha sequences - R script is provided for RPANDA macroevolutionary analyses, which are based on the dated phylogenetic tree generated in BEAST. - R script and input files (with prefix 'BGB') are provided for BioGeoBEARS biogeographic inference analysis - Phylogenomic trees in .nexus format are provided for representatives of the sub-Antarctic Ectemnorhinini together with a worldwide sample of Entiminae weevils, based on a concatenated dataset of 515 genes (1st and 2nd codons)

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