Short Tailed Shearwater DREAM gene sequencing fastq files
This data set includes unprocessed sample .fastq files from two separate Illumina NextSeq runs, labelled as 'Run_1' and 'Run_2', respectively. Sample names: e.g. STS15059, 'STS' is the abbreviation of Short-tailed shearwater. The first two digits of the numeric refer to...
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Format: | Dataset |
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Australian Ocean Data Network
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Online Access: | https://researchdata.ands.org.au/short-tailed-shearwater-fastq-files/1358661 https://data.aad.gov.au/metadata/records/AAS_4014_shearwater_DREAM https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4014_shearwater_DREAM http://data.aad.gov.au/eds/4791/download https://secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=AAS_4014 |
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ftands:oai:ands.org.au::1358661 |
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ftands:oai:ands.org.au::1358661 2023-05-15T18:25:58+02:00 Short Tailed Shearwater DREAM gene sequencing fastq files AADC (originator) AU/AADC > Australian Antarctic Data Centre, Australia (resourceProvider) Spatial: northlimit=-40.20825; southlimit=-40.31723; westlimit=148.08609; eastLimit=148.34579 Temporal: From 2015-11-01 to 2017-12-31 https://researchdata.ands.org.au/short-tailed-shearwater-fastq-files/1358661 https://data.aad.gov.au/metadata/records/AAS_4014_shearwater_DREAM https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4014_shearwater_DREAM http://data.aad.gov.au/eds/4791/download https://secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=AAS_4014 unknown Australian Ocean Data Network https://researchdata.ands.org.au/short-tailed-shearwater-fastq-files/1358661 64fafa41-0300-408b-af42-cab0b2efa453 https://data.aad.gov.au/metadata/records/AAS_4014_shearwater_DREAM https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4014_shearwater_DREAM http://data.aad.gov.au/eds/4791/download https://secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=AAS_4014 https://data.aad.gov.au biota oceans ALBATROSSES/PETRELS AND ALLIES EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/VERTEBRATES BIRDS DREAM DNA DNA METHYLATION CHRONOLOGICAL AGE SHORT-TAILED SHEARWATER ADS > Automated DNA Sequencer LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA > Tasmania Flinders Island dataset ftands 2020-01-05T22:19:52Z This data set includes unprocessed sample .fastq files from two separate Illumina NextSeq runs, labelled as 'Run_1' and 'Run_2', respectively. Sample names: e.g. STS15059, 'STS' is the abbreviation of Short-tailed shearwater. The first two digits of the numeric refer to the year of collection e.g. '15' = 2015. Finally, the following number refers to the sequential unique ID for that year, e.g. '059' is the fifty-ninth sample for the years' collection. Leg bands are also recorded and are generally a 5-digit number and are unique to the individual bird. Longitudinal samples can be identified using these band IDs. E.g. in Run_2, an individual with the band number: 52196, was collected in 2015 as 'STS15065' and again in 2017 as 'STS17044'. Run_1: N = 35 individual samples are split across 4 lanes e.g. 'STS16020_S35_L001(/L002/L003/L004)_R1_001/fastq' and need to be merged before conversion to .fasta format and downstream analysis. Run_2: N = 36 individual samples were provided as a single merged file from the service provider, e.g. 'STS15059_S34_R1_001.fastq'. Sample_info: This excel spreadsheet has information on samples as follows: 'Band': 5-digit number on leg band. 'Sample': Sample number within run. 'UID': The unique ID for collection year e.g. STS15007. 'Age': The known-age of the animal rounded to whole year. 'Index (NebNext)': The NEB index used for NGS sample identification. 'Note': Additional information on if a sample was a between or within run replicate or longitudinal replicate. Analysis of these data will be published in: [tba: R. De Paoli-Iseppi et al. 2018. Molecular Ecology Resources]. Raw .fastq sequence files for replication of published results or other genomic analyses. Dataset Southern Ocean Research Data Australia (Australian National Data Service - ANDS) Southern Ocean New Zealand Lanes ENVELOPE(18.933,18.933,69.617,69.617) Flinders ENVELOPE(-66.667,-66.667,-69.267,-69.267) ENVELOPE(148.08609,148.34579,-40.20825,-40.31723) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
biota oceans ALBATROSSES/PETRELS AND ALLIES EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/VERTEBRATES BIRDS DREAM DNA DNA METHYLATION CHRONOLOGICAL AGE SHORT-TAILED SHEARWATER ADS > Automated DNA Sequencer LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA > Tasmania Flinders Island |
spellingShingle |
biota oceans ALBATROSSES/PETRELS AND ALLIES EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/VERTEBRATES BIRDS DREAM DNA DNA METHYLATION CHRONOLOGICAL AGE SHORT-TAILED SHEARWATER ADS > Automated DNA Sequencer LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA > Tasmania Flinders Island Short Tailed Shearwater DREAM gene sequencing fastq files |
topic_facet |
biota oceans ALBATROSSES/PETRELS AND ALLIES EARTH SCIENCE BIOLOGICAL CLASSIFICATION ANIMALS/VERTEBRATES BIRDS DREAM DNA DNA METHYLATION CHRONOLOGICAL AGE SHORT-TAILED SHEARWATER ADS > Automated DNA Sequencer LABORATORY AMD/AU AMD CEOS GEOGRAPHIC REGION > POLAR OCEAN > SOUTHERN OCEAN CONTINENT > AUSTRALIA/NEW ZEALAND > AUSTRALIA > Tasmania Flinders Island |
description |
This data set includes unprocessed sample .fastq files from two separate Illumina NextSeq runs, labelled as 'Run_1' and 'Run_2', respectively. Sample names: e.g. STS15059, 'STS' is the abbreviation of Short-tailed shearwater. The first two digits of the numeric refer to the year of collection e.g. '15' = 2015. Finally, the following number refers to the sequential unique ID for that year, e.g. '059' is the fifty-ninth sample for the years' collection. Leg bands are also recorded and are generally a 5-digit number and are unique to the individual bird. Longitudinal samples can be identified using these band IDs. E.g. in Run_2, an individual with the band number: 52196, was collected in 2015 as 'STS15065' and again in 2017 as 'STS17044'. Run_1: N = 35 individual samples are split across 4 lanes e.g. 'STS16020_S35_L001(/L002/L003/L004)_R1_001/fastq' and need to be merged before conversion to .fasta format and downstream analysis. Run_2: N = 36 individual samples were provided as a single merged file from the service provider, e.g. 'STS15059_S34_R1_001.fastq'. Sample_info: This excel spreadsheet has information on samples as follows: 'Band': 5-digit number on leg band. 'Sample': Sample number within run. 'UID': The unique ID for collection year e.g. STS15007. 'Age': The known-age of the animal rounded to whole year. 'Index (NebNext)': The NEB index used for NGS sample identification. 'Note': Additional information on if a sample was a between or within run replicate or longitudinal replicate. Analysis of these data will be published in: [tba: R. De Paoli-Iseppi et al. 2018. Molecular Ecology Resources]. Raw .fastq sequence files for replication of published results or other genomic analyses. |
author2 |
AADC (originator) AU/AADC > Australian Antarctic Data Centre, Australia (resourceProvider) |
format |
Dataset |
title |
Short Tailed Shearwater DREAM gene sequencing fastq files |
title_short |
Short Tailed Shearwater DREAM gene sequencing fastq files |
title_full |
Short Tailed Shearwater DREAM gene sequencing fastq files |
title_fullStr |
Short Tailed Shearwater DREAM gene sequencing fastq files |
title_full_unstemmed |
Short Tailed Shearwater DREAM gene sequencing fastq files |
title_sort |
short tailed shearwater dream gene sequencing fastq files |
publisher |
Australian Ocean Data Network |
url |
https://researchdata.ands.org.au/short-tailed-shearwater-fastq-files/1358661 https://data.aad.gov.au/metadata/records/AAS_4014_shearwater_DREAM https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4014_shearwater_DREAM http://data.aad.gov.au/eds/4791/download https://secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=AAS_4014 |
op_coverage |
Spatial: northlimit=-40.20825; southlimit=-40.31723; westlimit=148.08609; eastLimit=148.34579 Temporal: From 2015-11-01 to 2017-12-31 |
long_lat |
ENVELOPE(18.933,18.933,69.617,69.617) ENVELOPE(-66.667,-66.667,-69.267,-69.267) ENVELOPE(148.08609,148.34579,-40.20825,-40.31723) |
geographic |
Southern Ocean New Zealand Lanes Flinders |
geographic_facet |
Southern Ocean New Zealand Lanes Flinders |
genre |
Southern Ocean |
genre_facet |
Southern Ocean |
op_source |
https://data.aad.gov.au |
op_relation |
https://researchdata.ands.org.au/short-tailed-shearwater-fastq-files/1358661 64fafa41-0300-408b-af42-cab0b2efa453 https://data.aad.gov.au/metadata/records/AAS_4014_shearwater_DREAM https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4014_shearwater_DREAM http://data.aad.gov.au/eds/4791/download https://secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=AAS_4014 |
_version_ |
1766207709115318272 |