Tasmanian salmon genotyping

SNPs discovered in 20 farmed Tasmanian salmon from high covergae sequence analysis, SNps present in double haploid reference animal removed. 100bp PE illumina sequence from 19 farmed atlantic salmon aligned to salmon reference genome, assembly ICSASG_v2, and sdY contigs (KP898411 and KP898412) using...

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Bibliographic Details
Other Authors: CSIRO (isManagedBy), CSIRO (hasAssociationWith), James Kijas (hasPrincipalInvestigator)
Format: Dataset
Language:unknown
Published: Commonwealth Scientific and Industrial Research Organisation
Subjects:
Salmon
Salmo salar
variant discovery
Aquaculture
AGRICULTURAL AND VETERINARY SCIENCES
FISHERIES SCIENCES
Genomics
BIOLOGICAL SCIENCES
GENETICS
Atlantic salmon
Online Access:https://researchdata.edu.au/tasmanian-salmon-genotyping/1306315
https://doi.org/10.4225/08/5a6e520150c52
id ftands:oai:ands.org.au::1306315
record_format openpolar
spelling ftands:oai:ands.org.au::1306315 2023-05-15T15:31:01+02:00 Tasmanian salmon genotyping CSIRO (isManagedBy) CSIRO (hasAssociationWith) James Kijas (hasPrincipalInvestigator) https://researchdata.edu.au/tasmanian-salmon-genotyping/1306315 https://doi.org/10.4225/08/5a6e520150c52 unknown Commonwealth Scientific and Industrial Research Organisation https://researchdata.edu.au/tasmanian-salmon-genotyping/1306315 102.100.100/62823 doi:10.4225/08/5a6e520150c52 https://data.csiro.au/dap/ Salmon Salmo salar variant discovery Aquaculture AGRICULTURAL AND VETERINARY SCIENCES FISHERIES SCIENCES Genomics BIOLOGICAL SCIENCES GENETICS dataset ftands https://doi.org/10.4225/08/5a6e520150c52 2022-12-19T23:35:25Z SNPs discovered in 20 farmed Tasmanian salmon from high covergae sequence analysis, SNps present in double haploid reference animal removed. 100bp PE illumina sequence from 19 farmed atlantic salmon aligned to salmon reference genome, assembly ICSASG_v2, and sdY contigs (KP898411 and KP898412) using BWA. Variants called using GATK tools. Doulbe haploid SNPs removed. Dataset Atlantic salmon Salmo salar Research Data Australia (Australian National Data Service - ANDS)
institution Open Polar
collection Research Data Australia (Australian National Data Service - ANDS)
op_collection_id ftands
language unknown
topic Salmon
Salmo salar
variant discovery
Aquaculture
AGRICULTURAL AND VETERINARY SCIENCES
FISHERIES SCIENCES
Genomics
BIOLOGICAL SCIENCES
GENETICS
spellingShingle Salmon
Salmo salar
variant discovery
Aquaculture
AGRICULTURAL AND VETERINARY SCIENCES
FISHERIES SCIENCES
Genomics
BIOLOGICAL SCIENCES
GENETICS
Tasmanian salmon genotyping
topic_facet Salmon
Salmo salar
variant discovery
Aquaculture
AGRICULTURAL AND VETERINARY SCIENCES
FISHERIES SCIENCES
Genomics
BIOLOGICAL SCIENCES
GENETICS
description SNPs discovered in 20 farmed Tasmanian salmon from high covergae sequence analysis, SNps present in double haploid reference animal removed. 100bp PE illumina sequence from 19 farmed atlantic salmon aligned to salmon reference genome, assembly ICSASG_v2, and sdY contigs (KP898411 and KP898412) using BWA. Variants called using GATK tools. Doulbe haploid SNPs removed.
author2 CSIRO (isManagedBy)
CSIRO (hasAssociationWith)
James Kijas (hasPrincipalInvestigator)
format Dataset
title Tasmanian salmon genotyping
title_short Tasmanian salmon genotyping
title_full Tasmanian salmon genotyping
title_fullStr Tasmanian salmon genotyping
title_full_unstemmed Tasmanian salmon genotyping
title_sort tasmanian salmon genotyping
publisher Commonwealth Scientific and Industrial Research Organisation
url https://researchdata.edu.au/tasmanian-salmon-genotyping/1306315
https://doi.org/10.4225/08/5a6e520150c52
genre Atlantic salmon
Salmo salar
genre_facet Atlantic salmon
Salmo salar
op_source https://data.csiro.au/dap/
op_relation https://researchdata.edu.au/tasmanian-salmon-genotyping/1306315
102.100.100/62823
doi:10.4225/08/5a6e520150c52
op_doi https://doi.org/10.4225/08/5a6e520150c52
_version_ 1766361511007092736

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