Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae)
Ficus carica L. is a species of Moraceae family that has been cultivated in different parts of the world from ancient time. Its fruit is eaten by human and has several medicinal properties. This species widely grows and cultivated in various parts of Iran. For this, in the current study, we investig...
Published in: | Acta Biologica Sibirica |
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Altai State University
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ftaltaistuniojs:oai:journal.asu.ru:article/6534 2023-05-15T18:19:32+02:00 Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae) Zolfaghari, M.R. Salimpour, F. Sharifnia, F. Marandi, S.J. 2019-09-29 application/pdf application/xml http://journal.asu.ru/biol/article/view/6534 https://doi.org/10.14258/abs.v5.i3.6534 eng eng Altai State University http://journal.asu.ru/biol/article/view/6534/5235 http://journal.asu.ru/biol/article/view/6534/5374 http://journal.asu.ru/biol/article/view/6534 doi:10.14258/abs.v5.i3.6534 Copyright (c) 2019 Zolfaghari, M.R., Salimpour, F., Sharifnia, F., Peyvandi, M., Marandi, S.J. https://creativecommons.org/licenses/by/4.0/ CC-BY Acta Biologica Sibirica; Vol 5 No 3 (2019): Acta Biologica Sibirica; 131-138 Acta Biologica Sibirica; Том 5 № 3 (2019): Acta Biologica Sibirica; 131-138 2412-1908 10.14258/abs.v5i3 RAPD Ficus carica population genetic diversity info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion 2019 ftaltaistuniojs https://doi.org/10.14258/abs.v5.i3.6534 https://doi.org/10.14258/abs.v5i3 2021-04-14T18:32:11Z Ficus carica L. is a species of Moraceae family that has been cultivated in different parts of the world from ancient time. Its fruit is eaten by human and has several medicinal properties. This species widely grows and cultivated in various parts of Iran. For this, in the current study, we investigated infraspecific genetic variation and population structure of F. carica in the country. 14 natural populations of F. carica were collected and their genomic DNA were extracted and tested with RAPD molecular technique. Parameters of population’s genetic diversity varied among the studied populations. In addition, AMOVA test revealed significant variations among the populations. The studied populations clustered separately in UPGMA tree of RAPD data, moreover PCA and MDS plots produced similar results. STRUCTURE analysis revealed the best number of k = 9. Based on Nei’s genetic distance, we had nine distinct groups. Genetic clustering patterns according to UPGMA trees of RAPD data and Nei’s genetic distance were more similar with the results of STRUCTURE analysis. The small amount of Nm) the product of the effective size of individual populations (N) and the rate of migration among them (m) (value showed limited gene flow among the studied populations, therefore it seems that high genetic variations among these populations may be related less or few amount of gene exchange among populations. Ficus carica L. is a species of Moraceae family that has been cultivated in different parts of the world from ancient time. Its fruit is eaten by human and has several medicinal properties. This species widely grows and cultivated in various parts of Iran. For this, in the current study, we investigated infraspecific genetic variation and population structure of F. carica in the country. 14 natural populations of F. carica were collected and their genomic DNA were extracted and tested with RAPD molecular technique. Parameters of population’s genetic diversity varied among the studied populations. In addition, AMOVA test revealed significant variations among the populations. The studied populations clustered separately in UPGMA tree of RAPD data, moreover PCA and MDS plots produced similar results. STRUCTURE analysis revealed the best number of k = 9. Based on Nei’s genetic distance, we had nine distinct groups. Genetic clustering patterns according to UPGMA trees of RAPD data and Nei’s genetic distance were more similar with the results of STRUCTURE analysis. The small amount of Nm) the product of the effective size of individual populations (N) and the rate of migration among them (m) (value showed limited gene flow among the studied populations, therefore it seems that high genetic variations among these populations may be related less or few amount of gene exchange among populations. Article in Journal/Newspaper Sibirica Altai State University: Scientific Journals of ASU Acta Biologica Sibirica 5 3 131 138 |
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Altai State University: Scientific Journals of ASU |
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English |
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RAPD Ficus carica population genetic diversity |
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RAPD Ficus carica population genetic diversity Zolfaghari, M.R. Salimpour, F. Sharifnia, F. Marandi, S.J. Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae) |
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RAPD Ficus carica population genetic diversity |
description |
Ficus carica L. is a species of Moraceae family that has been cultivated in different parts of the world from ancient time. Its fruit is eaten by human and has several medicinal properties. This species widely grows and cultivated in various parts of Iran. For this, in the current study, we investigated infraspecific genetic variation and population structure of F. carica in the country. 14 natural populations of F. carica were collected and their genomic DNA were extracted and tested with RAPD molecular technique. Parameters of population’s genetic diversity varied among the studied populations. In addition, AMOVA test revealed significant variations among the populations. The studied populations clustered separately in UPGMA tree of RAPD data, moreover PCA and MDS plots produced similar results. STRUCTURE analysis revealed the best number of k = 9. Based on Nei’s genetic distance, we had nine distinct groups. Genetic clustering patterns according to UPGMA trees of RAPD data and Nei’s genetic distance were more similar with the results of STRUCTURE analysis. The small amount of Nm) the product of the effective size of individual populations (N) and the rate of migration among them (m) (value showed limited gene flow among the studied populations, therefore it seems that high genetic variations among these populations may be related less or few amount of gene exchange among populations. Ficus carica L. is a species of Moraceae family that has been cultivated in different parts of the world from ancient time. Its fruit is eaten by human and has several medicinal properties. This species widely grows and cultivated in various parts of Iran. For this, in the current study, we investigated infraspecific genetic variation and population structure of F. carica in the country. 14 natural populations of F. carica were collected and their genomic DNA were extracted and tested with RAPD molecular technique. Parameters of population’s genetic diversity varied among the studied populations. In addition, AMOVA test revealed significant variations among the populations. The studied populations clustered separately in UPGMA tree of RAPD data, moreover PCA and MDS plots produced similar results. STRUCTURE analysis revealed the best number of k = 9. Based on Nei’s genetic distance, we had nine distinct groups. Genetic clustering patterns according to UPGMA trees of RAPD data and Nei’s genetic distance were more similar with the results of STRUCTURE analysis. The small amount of Nm) the product of the effective size of individual populations (N) and the rate of migration among them (m) (value showed limited gene flow among the studied populations, therefore it seems that high genetic variations among these populations may be related less or few amount of gene exchange among populations. |
format |
Article in Journal/Newspaper |
author |
Zolfaghari, M.R. Salimpour, F. Sharifnia, F. Marandi, S.J. |
author_facet |
Zolfaghari, M.R. Salimpour, F. Sharifnia, F. Marandi, S.J. |
author_sort |
Zolfaghari, M.R. |
title |
Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae) |
title_short |
Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae) |
title_full |
Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae) |
title_fullStr |
Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae) |
title_full_unstemmed |
Analysis of genetic diversity among Iranian populations of Ficus carica L. (Moraceae) |
title_sort |
analysis of genetic diversity among iranian populations of ficus carica l. (moraceae) |
publisher |
Altai State University |
publishDate |
2019 |
url |
http://journal.asu.ru/biol/article/view/6534 https://doi.org/10.14258/abs.v5.i3.6534 |
genre |
Sibirica |
genre_facet |
Sibirica |
op_source |
Acta Biologica Sibirica; Vol 5 No 3 (2019): Acta Biologica Sibirica; 131-138 Acta Biologica Sibirica; Том 5 № 3 (2019): Acta Biologica Sibirica; 131-138 2412-1908 10.14258/abs.v5i3 |
op_relation |
http://journal.asu.ru/biol/article/view/6534/5235 http://journal.asu.ru/biol/article/view/6534/5374 http://journal.asu.ru/biol/article/view/6534 doi:10.14258/abs.v5.i3.6534 |
op_rights |
Copyright (c) 2019 Zolfaghari, M.R., Salimpour, F., Sharifnia, F., Peyvandi, M., Marandi, S.J. https://creativecommons.org/licenses/by/4.0/ |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.14258/abs.v5.i3.6534 https://doi.org/10.14258/abs.v5i3 |
container_title |
Acta Biologica Sibirica |
container_volume |
5 |
container_issue |
3 |
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131 |
op_container_end_page |
138 |
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1766196674401665024 |