SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin
Knowledge about past climates, especially at a seasonal time scale, is important as it allows informed decisions to be made to mitigate future climate change. However, globally, and especially in semi-arid Tropics, instrumental climatic data are scarce. A dendroclimatic approach may fill this gap, b...
Published in: | Frontiers in Plant Science |
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Online Access: | https://hal.inrae.fr/hal-04226953 https://hal.inrae.fr/hal-04226953/document https://hal.inrae.fr/hal-04226953/file/2021%20Gebregeorgis%20FPS.pdf https://doi.org/10.3389/fpls.2021.595258 |
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ftagroparistech:oai:HAL:hal-04226953v1 2023-11-05T03:40:08+01:00 SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin Gebregeorgis, Eyob Gebrehiwot Boniecka, Justyna Pia̧tkowski, Marcin Robertson, Iain Rathgeber, Cyrille, B K Addis Ababa University (AAU) Nicolaus Copernicus University Toruń Swansea University SILVA (SILVA) AgroParisTech-Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) 2021-03-18 https://hal.inrae.fr/hal-04226953 https://hal.inrae.fr/hal-04226953/document https://hal.inrae.fr/hal-04226953/file/2021%20Gebregeorgis%20FPS.pdf https://doi.org/10.3389/fpls.2021.595258 en eng HAL CCSD Frontiers info:eu-repo/semantics/altIdentifier/doi/10.3389/fpls.2021.595258 info:eu-repo/semantics/altIdentifier/pmid/33815433 hal-04226953 https://hal.inrae.fr/hal-04226953 https://hal.inrae.fr/hal-04226953/document https://hal.inrae.fr/hal-04226953/file/2021%20Gebregeorgis%20FPS.pdf doi:10.3389/fpls.2021.595258 PUBMED: 33815433 WOS: 000635574000001 info:eu-repo/semantics/OpenAccess ISSN: 1664-462X Frontiers in Plant Science https://hal.inrae.fr/hal-04226953 Frontiers in Plant Science, 2021, 12, ⟨10.3389/fpls.2021.595258⟩ quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers [SDE.BE]Environmental Sciences/Biodiversity and Ecology info:eu-repo/semantics/article Journal articles 2021 ftagroparistech https://doi.org/10.3389/fpls.2021.595258 2023-10-10T22:50:02Z Knowledge about past climates, especially at a seasonal time scale, is important as it allows informed decisions to be made to mitigate future climate change. However, globally, and especially in semi-arid Tropics, instrumental climatic data are scarce. A dendroclimatic approach may fill this gap, but tropical dendrochronological data are rare and do not yet provide fine resolution intra-annual information about past climates. Unlike in the Tropics, in the Mediterranean, temperate, alpine, and arctic regions, dendroanatomy and quantitative wood anatomy (QWA) are progressing fast attaining an intra-annual resolution, which allows a better understanding of seasonal climate dynamics and climate–growth relationships. The existing dendroanatomical and QWA methods aren’t suitable for tropical trees because they do not consider the high variation in tree ring width and the frequent occurrence of micro-rings containing only a few tracheids per radial file. The available tracheid analysis programs generally fail to provide multiple sectors for micro-rings and they are unable to compute most of the useful dendroanatomical parameters at fine temporal resolutions. Here, we present a program (SabaTracheid) that addresses the three main standard tasks that are necessary for QWA and dendroanatomy before running a climate analysis: (1) tracheidogram standardization, (2) sectoring, and (3) computing QWA and dendroanatomical variables. SabaTracheid is demonstrated on African Juniper ( Juniperus procera Hochst. ex Endl), but it is potentially able to provide fine-resolution QWA and dendroanatomic data that could be used for dendroanatomical studies in all regions of the world. SabaTracheid is a freeware that quickly and accurately standardizes tracheidograms, divides tree rings into multiple regular sectors, computes useful dendroanatomic and QWA variables for the whole tree rings, early- and latewood portions, and each sector separately. This program is particularly adapted to deal with high inter-annual growth variations ... Article in Journal/Newspaper Arctic Climate change AgroParisTech: HAL (Institut des sciences et industries du vivant et de l'environnement) Frontiers in Plant Science 12 |
institution |
Open Polar |
collection |
AgroParisTech: HAL (Institut des sciences et industries du vivant et de l'environnement) |
op_collection_id |
ftagroparistech |
language |
English |
topic |
quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers [SDE.BE]Environmental Sciences/Biodiversity and Ecology |
spellingShingle |
quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers [SDE.BE]Environmental Sciences/Biodiversity and Ecology Gebregeorgis, Eyob Gebrehiwot Boniecka, Justyna Pia̧tkowski, Marcin Robertson, Iain Rathgeber, Cyrille, B K SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin |
topic_facet |
quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers quantitative wood anatomy (QWA) earlywood and latewood anatomy dendroanatomy tracheidogram methods tropical conifers [SDE.BE]Environmental Sciences/Biodiversity and Ecology |
description |
Knowledge about past climates, especially at a seasonal time scale, is important as it allows informed decisions to be made to mitigate future climate change. However, globally, and especially in semi-arid Tropics, instrumental climatic data are scarce. A dendroclimatic approach may fill this gap, but tropical dendrochronological data are rare and do not yet provide fine resolution intra-annual information about past climates. Unlike in the Tropics, in the Mediterranean, temperate, alpine, and arctic regions, dendroanatomy and quantitative wood anatomy (QWA) are progressing fast attaining an intra-annual resolution, which allows a better understanding of seasonal climate dynamics and climate–growth relationships. The existing dendroanatomical and QWA methods aren’t suitable for tropical trees because they do not consider the high variation in tree ring width and the frequent occurrence of micro-rings containing only a few tracheids per radial file. The available tracheid analysis programs generally fail to provide multiple sectors for micro-rings and they are unable to compute most of the useful dendroanatomical parameters at fine temporal resolutions. Here, we present a program (SabaTracheid) that addresses the three main standard tasks that are necessary for QWA and dendroanatomy before running a climate analysis: (1) tracheidogram standardization, (2) sectoring, and (3) computing QWA and dendroanatomical variables. SabaTracheid is demonstrated on African Juniper ( Juniperus procera Hochst. ex Endl), but it is potentially able to provide fine-resolution QWA and dendroanatomic data that could be used for dendroanatomical studies in all regions of the world. SabaTracheid is a freeware that quickly and accurately standardizes tracheidograms, divides tree rings into multiple regular sectors, computes useful dendroanatomic and QWA variables for the whole tree rings, early- and latewood portions, and each sector separately. This program is particularly adapted to deal with high inter-annual growth variations ... |
author2 |
Addis Ababa University (AAU) Nicolaus Copernicus University Toruń Swansea University SILVA (SILVA) AgroParisTech-Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) |
format |
Article in Journal/Newspaper |
author |
Gebregeorgis, Eyob Gebrehiwot Boniecka, Justyna Pia̧tkowski, Marcin Robertson, Iain Rathgeber, Cyrille, B K |
author_facet |
Gebregeorgis, Eyob Gebrehiwot Boniecka, Justyna Pia̧tkowski, Marcin Robertson, Iain Rathgeber, Cyrille, B K |
author_sort |
Gebregeorgis, Eyob Gebrehiwot |
title |
SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin |
title_short |
SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin |
title_full |
SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin |
title_fullStr |
SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin |
title_full_unstemmed |
SabaTracheid 1.0: A Novel Program for Quantitative Analysis of Conifer Wood Anatomy — A Demonstration on African Juniper From the Blue Nile Basin |
title_sort |
sabatracheid 1.0: a novel program for quantitative analysis of conifer wood anatomy — a demonstration on african juniper from the blue nile basin |
publisher |
HAL CCSD |
publishDate |
2021 |
url |
https://hal.inrae.fr/hal-04226953 https://hal.inrae.fr/hal-04226953/document https://hal.inrae.fr/hal-04226953/file/2021%20Gebregeorgis%20FPS.pdf https://doi.org/10.3389/fpls.2021.595258 |
genre |
Arctic Climate change |
genre_facet |
Arctic Climate change |
op_source |
ISSN: 1664-462X Frontiers in Plant Science https://hal.inrae.fr/hal-04226953 Frontiers in Plant Science, 2021, 12, ⟨10.3389/fpls.2021.595258⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.3389/fpls.2021.595258 info:eu-repo/semantics/altIdentifier/pmid/33815433 hal-04226953 https://hal.inrae.fr/hal-04226953 https://hal.inrae.fr/hal-04226953/document https://hal.inrae.fr/hal-04226953/file/2021%20Gebregeorgis%20FPS.pdf doi:10.3389/fpls.2021.595258 PUBMED: 33815433 WOS: 000635574000001 |
op_rights |
info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.3389/fpls.2021.595258 |
container_title |
Frontiers in Plant Science |
container_volume |
12 |
_version_ |
1781696095510855680 |