Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries

• Published in: Aquaculture Reports
• Main Authors: Boudry, Pierre, Allal, François, Aslam, Muhammad L., Bargelloni, Luca, Bean, Tim P., Brard-Fudulea, Sophie, Brieuc, Marine S. O., Calboli, Federico C. F., Gilbey, John, Haffray, Pierrick, Lamy, Jean-Baptiste, Morvezen, Romain, Purcell, Catherine, Prodöhl, Paulo A., Vandeputte, Marc, Waldbieser, Geoffrey C., Sonesson, Anna K., Houston, Ross D.
• Other Authors: Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Norwegian Institute of Food,Fisheries and Aquaculture Research (NOFIMA), Università degli Studi di Padova = University of Padua (Unipd), The Roslin Institute, Biotechnology and Biological Sciences Research Council (BBSRC), Syndicat des Sélectionneurs Avicoles et Aquacoles Français (SYSAAF), University of Oslo (UiO), Catholic University of Leuven = Katholieke Universiteit Leuven (KU Leuven), Marine Scotland Science (MSS), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), National Oceanic and Atmospheric Administration (NOAA), Queen's University Belfast (QUB), Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), United States Department of Agriculture (USDA)
• Format: Article in Journal/Newspaper
• Language: English
• Published: HAL CCSD 2021
• Subjects: Aquaculture; Selective breeding; SNP array; Genomic selection; Genotyping by sequencing; [SDE.BE]Environmental Sciences/Biodiversity and Ecology; [SDE.MCG]Environmental Sciences/Global Changes; Pacific; atlantic cod; Atlantic salmon; Pacific oyster
• Online Access: https://hal.umontpellier.fr/hal-03411084; https://hal.umontpellier.fr/hal-03411084/document; https://hal.umontpellier.fr/hal-03411084/file/1-s2.0-S2352513421001162-main.pdf; https://doi.org/10.1016/j.aqrep.2021.100700

WOS:000672569700006 International audience Selective breeding has been successfully applied to improve profitability and sustainability in numerous aquatic species. Recent developments of high throughput genotyping technology now enable the implementation of genomic selection, a method aiming to predict the breeding value of candidates based on their genotype at genome-wide markers. In this review article, we review the state of the arts, challenges and prospects for the application of genomic selection in aquaculture species. The particular focus is on the status of genomic selection in several major aquaculture species of International Council for the Exploration of the Sea (ICES) member countries: Atlantic salmon, rainbow trout, Atlantic cod, American catfish, Pacific oyster, European sea bass and gilthead sea bream. While the potential of genomic selection is clear, tailored species-specific applications will be needed to maximise its benefit for the aquaculture sector.