Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences
Disentangling the effects of natural environmental features and anthropogenic factors on the genetic structure of endangered populations is an important challenge for conservation biology. Here, we investigated the combined influences of major environmental features and stocking with non-native fish...
Published in: | Molecular Ecology |
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Online Access: | https://hal.science/hal-01004630 https://doi.org/10.1111/j.1365-294X.2011.05266.x |
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ftagroparistech:oai:HAL:hal-01004630v1 2023-11-05T03:40:31+01:00 Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences Perrier, Charles, C. Guyomard, René, R. Baglinière, Jean-Luc, J.-L. Evanno, Guillaume, G. Écologie et santé des écosystèmes (ESE) Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST Génétique Animale et Biologie Intégrative (GABI) Institut National de la Recherche Agronomique (INRA)-AgroParisTech INRA; Region Basse-Normandie; European Atlantic Salmon Arc Project 2011 https://hal.science/hal-01004630 https://doi.org/10.1111/j.1365-294X.2011.05266.x en eng HAL CCSD Wiley info:eu-repo/semantics/altIdentifier/doi/10.1111/j.1365-294X.2011.05266.x hal-01004630 https://hal.science/hal-01004630 doi:10.1111/j.1365-294X.2011.05266.x PRODINRA: 220813 WOS: 000296275100004 ISSN: 0962-1083 EISSN: 1365-294X Molecular Ecology https://hal.science/hal-01004630 Molecular Ecology, 2011, 20 (20), pp.4231 - 4245. ⟨10.1111/j.1365-294X.2011.05266.x⟩ Atlantic salmon genetic structure introgression stocking MICROSATELLITE DNA VARIATION BROWN TROUT POPULATIONS ALLELE FREQUENCY DATA SALAR L LOCAL ADAPTATION LANDSCAPE GENETICS NATURAL-SELECTION LIFE-HISTORY BALTIC SEA REPRODUCTIVE ISOLATION [SDV.SA]Life Sciences [q-bio]/Agricultural sciences info:eu-repo/semantics/article Journal articles 2011 ftagroparistech https://doi.org/10.1111/j.1365-294X.2011.05266.x 2023-10-10T23:12:26Z Disentangling the effects of natural environmental features and anthropogenic factors on the genetic structure of endangered populations is an important challenge for conservation biology. Here, we investigated the combined influences of major environmental features and stocking with non-native fish on the genetic structure and local adaptation of Atlantic salmon (Salmo salar) populations. We used 17 microsatellite loci to genotype 975 individuals originating from 34 French rivers. Bayesian analyses revealed a hierarchical genetic structure into five geographically distinct clusters. Coastal distance, geological substrate and river length were strong predictors of population structure. Gene flow was higher among rivers with similar geologies, suggesting local adaptation to geological substrate. The effect of river length was mainly owing to one highly differentiated population that has the farthest spawning grounds off the river mouth (up to 900 km) and the largest fish, suggesting local adaptation to river length. We detected high levels of admixture in stocked populations but also in neighbouring ones, implying large-scale impacts of stocking through dispersal of non-native individuals. However, we found relatively few admixed individuals suggesting a lower fitness of stocked fish and/or some reproductive isolation between wild and stocked individuals. When excluding stocked populations, genetic structure increased as did its correlation with environmental factors. This study overall indicates that geological substrate and river length are major environmental factors influencing gene flow and potential local adaptation among Atlantic salmon populations but that stocking with non-native individuals may ultimately disrupt these natural patterns of gene flow among locally adapted populations. Article in Journal/Newspaper Atlantic salmon Salmo salar AgroParisTech: HAL (Institut des sciences et industries du vivant et de l'environnement) Molecular Ecology 20 20 4231 4245 |
institution |
Open Polar |
collection |
AgroParisTech: HAL (Institut des sciences et industries du vivant et de l'environnement) |
op_collection_id |
ftagroparistech |
language |
English |
topic |
Atlantic salmon genetic structure introgression stocking MICROSATELLITE DNA VARIATION BROWN TROUT POPULATIONS ALLELE FREQUENCY DATA SALAR L LOCAL ADAPTATION LANDSCAPE GENETICS NATURAL-SELECTION LIFE-HISTORY BALTIC SEA REPRODUCTIVE ISOLATION [SDV.SA]Life Sciences [q-bio]/Agricultural sciences |
spellingShingle |
Atlantic salmon genetic structure introgression stocking MICROSATELLITE DNA VARIATION BROWN TROUT POPULATIONS ALLELE FREQUENCY DATA SALAR L LOCAL ADAPTATION LANDSCAPE GENETICS NATURAL-SELECTION LIFE-HISTORY BALTIC SEA REPRODUCTIVE ISOLATION [SDV.SA]Life Sciences [q-bio]/Agricultural sciences Perrier, Charles, C. Guyomard, René, R. Baglinière, Jean-Luc, J.-L. Evanno, Guillaume, G. Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences |
topic_facet |
Atlantic salmon genetic structure introgression stocking MICROSATELLITE DNA VARIATION BROWN TROUT POPULATIONS ALLELE FREQUENCY DATA SALAR L LOCAL ADAPTATION LANDSCAPE GENETICS NATURAL-SELECTION LIFE-HISTORY BALTIC SEA REPRODUCTIVE ISOLATION [SDV.SA]Life Sciences [q-bio]/Agricultural sciences |
description |
Disentangling the effects of natural environmental features and anthropogenic factors on the genetic structure of endangered populations is an important challenge for conservation biology. Here, we investigated the combined influences of major environmental features and stocking with non-native fish on the genetic structure and local adaptation of Atlantic salmon (Salmo salar) populations. We used 17 microsatellite loci to genotype 975 individuals originating from 34 French rivers. Bayesian analyses revealed a hierarchical genetic structure into five geographically distinct clusters. Coastal distance, geological substrate and river length were strong predictors of population structure. Gene flow was higher among rivers with similar geologies, suggesting local adaptation to geological substrate. The effect of river length was mainly owing to one highly differentiated population that has the farthest spawning grounds off the river mouth (up to 900 km) and the largest fish, suggesting local adaptation to river length. We detected high levels of admixture in stocked populations but also in neighbouring ones, implying large-scale impacts of stocking through dispersal of non-native individuals. However, we found relatively few admixed individuals suggesting a lower fitness of stocked fish and/or some reproductive isolation between wild and stocked individuals. When excluding stocked populations, genetic structure increased as did its correlation with environmental factors. This study overall indicates that geological substrate and river length are major environmental factors influencing gene flow and potential local adaptation among Atlantic salmon populations but that stocking with non-native individuals may ultimately disrupt these natural patterns of gene flow among locally adapted populations. |
author2 |
Écologie et santé des écosystèmes (ESE) Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST Génétique Animale et Biologie Intégrative (GABI) Institut National de la Recherche Agronomique (INRA)-AgroParisTech INRA; Region Basse-Normandie; European Atlantic Salmon Arc Project |
format |
Article in Journal/Newspaper |
author |
Perrier, Charles, C. Guyomard, René, R. Baglinière, Jean-Luc, J.-L. Evanno, Guillaume, G. |
author_facet |
Perrier, Charles, C. Guyomard, René, R. Baglinière, Jean-Luc, J.-L. Evanno, Guillaume, G. |
author_sort |
Perrier, Charles, C. |
title |
Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences |
title_short |
Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences |
title_full |
Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences |
title_fullStr |
Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences |
title_full_unstemmed |
Determinants of hierarchical genetic structure in Atlantic salmonpopulations: environmental factors vs. anthropogenic influences |
title_sort |
determinants of hierarchical genetic structure in atlantic salmonpopulations: environmental factors vs. anthropogenic influences |
publisher |
HAL CCSD |
publishDate |
2011 |
url |
https://hal.science/hal-01004630 https://doi.org/10.1111/j.1365-294X.2011.05266.x |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_source |
ISSN: 0962-1083 EISSN: 1365-294X Molecular Ecology https://hal.science/hal-01004630 Molecular Ecology, 2011, 20 (20), pp.4231 - 4245. ⟨10.1111/j.1365-294X.2011.05266.x⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1111/j.1365-294X.2011.05266.x hal-01004630 https://hal.science/hal-01004630 doi:10.1111/j.1365-294X.2011.05266.x PRODINRA: 220813 WOS: 000296275100004 |
op_doi |
https://doi.org/10.1111/j.1365-294X.2011.05266.x |
container_title |
Molecular Ecology |
container_volume |
20 |
container_issue |
20 |
container_start_page |
4231 |
op_container_end_page |
4245 |
_version_ |
1781696610343845888 |