Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914)
The work was funded by Kone Foundation (Grant no. 201803224 for AJR and RK) and Academy of Finland (Project No. 323214 & 346983 for RM and No. 346751 & 353750 for AJR). We thank DSMZ on the genome sequencing and assembly. Tampere University provided funding for the publishing (open access) f...
Published in: | Data in Brief |
---|---|
Main Authors: | , , , |
Other Authors: | , , , , , |
Format: | Other/Unknown Material |
Language: | English |
Published: |
Elsevier
2022
|
Subjects: | |
Online Access: | https://aaltodoc.aalto.fi/handle/123456789/119698 https://doi.org/10.1016/j.dib.2022.108689 |
id |
ftaaltouniv:oai:aaltodoc.aalto.fi:123456789/119698 |
---|---|
record_format |
openpolar |
spelling |
ftaaltouniv:oai:aaltodoc.aalto.fi:123456789/119698 2023-05-15T14:56:43+02:00 Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) Rissanen, Antti Juhani Mangayil, Rahul Svenning, Mette Marianne Khanongnuch, Ramita Natural Resources Institute Finland (Luke) Department of Bioproducts and Biosystems University of Tromso Tampere University Aalto-yliopisto Aalto University 2022-12 application/pdf https://aaltodoc.aalto.fi/handle/123456789/119698 https://doi.org/10.1016/j.dib.2022.108689 en eng Elsevier Data in Brief Volume 45 Rissanen , A J , Mangayil , R , Svenning , M M & Khanongnuch , R 2022 , ' Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) ' , Data in Brief , vol. 45 , 108689 . https://doi.org/10.1016/j.dib.2022.108689 2352-3409 PURE UUID: be3d028a-2fbb-4cef-b12c-746f398f255a PURE ITEMURL: https://research.aalto.fi/en/publications/be3d028a-2fbb-4cef-b12c-746f398f255a PURE FILEURL: https://research.aalto.fi/files/99632259/1_s2.0_S2352340922008940_main.pdf https://aaltodoc.aalto.fi/handle/123456789/119698 URN:NBN:fi:aalto-202302082048 doi:10.1016/j.dib.2022.108689 openAccess Methanotroph Methylobacter Psychrophilic Cold ecosystem Methane Tundra Boreal Arctic DNA-DNA HYBRIDIZATION Data Article publishedVersion 2022 ftaaltouniv https://doi.org/10.1016/j.dib.2022.108689 2023-02-08T23:58:11Z The work was funded by Kone Foundation (Grant no. 201803224 for AJR and RK) and Academy of Finland (Project No. 323214 & 346983 for RM and No. 346751 & 353750 for AJR). We thank DSMZ on the genome sequencing and assembly. Tampere University provided funding for the publishing (open access) fee. Psychrophilic methanotrophic bacteria are abundant and play an important role in methane removal in cold methanogenic environments, such as boreal and arctic terrestrial and aquatic ecosystems. They could be also applied in the bio-conversion of biogas and natural gas into value-added products (e.g., chemicals and single-cell protein) in cold regions. Hence, isolation and genome sequencing of psychrophilic methanotrophic bacteria are needed to provide important data on their functional capabilities. However, psychrophilic methanotroph isolates and consequently their genome sequences are rare. Fortunately, Leibniz Institute, DSMZ-German Collection of Microorganisms and Cell Cultures GmbH was able to revive the long-extinct pure culture of a psychrophilic methanotrophic tundra soil isolate, Methylobacter psychrophilus Z-0021 (DSM 9914), from their stocks during 2022. Here, we describe the de novo assembled genome sequence of Methylobacter psychrophilus Z-0021 comprising a total of 4691082 bp in 156 contigs witha G + C content of 43.1% and 4074 coding sequences. The preliminary genome annotation analysis of Z-0021 identified genes encoding oxidation of methane, methanol and formaldehyde, assimilation of carbon and nitrate, and N2 fixation. In pair-wise genome-to-genome comparisons with closely related methanotrophic strains, the strain Z-0021 had an average nucleotide identity (ANI) of 92.9% and 78.2% and a digital DNA-DNA hybridization (dDDH) value of 50.6% and 22% with a recently described psychrophilic, lake isolate, Methylobacter sp. S3L5C and a psychrotrophic, arctic wetland soil isolate, Methylobacter tundripaludum SV96, respectively. In addition, the respective similarities between genomes of the strains ... Other/Unknown Material Arctic Tundra Aalto University Publication Archive (Aaltodoc) Arctic Data in Brief 45 108689 |
institution |
Open Polar |
collection |
Aalto University Publication Archive (Aaltodoc) |
op_collection_id |
ftaaltouniv |
language |
English |
topic |
Methanotroph Methylobacter Psychrophilic Cold ecosystem Methane Tundra Boreal Arctic DNA-DNA HYBRIDIZATION |
spellingShingle |
Methanotroph Methylobacter Psychrophilic Cold ecosystem Methane Tundra Boreal Arctic DNA-DNA HYBRIDIZATION Rissanen, Antti Juhani Mangayil, Rahul Svenning, Mette Marianne Khanongnuch, Ramita Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) |
topic_facet |
Methanotroph Methylobacter Psychrophilic Cold ecosystem Methane Tundra Boreal Arctic DNA-DNA HYBRIDIZATION |
description |
The work was funded by Kone Foundation (Grant no. 201803224 for AJR and RK) and Academy of Finland (Project No. 323214 & 346983 for RM and No. 346751 & 353750 for AJR). We thank DSMZ on the genome sequencing and assembly. Tampere University provided funding for the publishing (open access) fee. Psychrophilic methanotrophic bacteria are abundant and play an important role in methane removal in cold methanogenic environments, such as boreal and arctic terrestrial and aquatic ecosystems. They could be also applied in the bio-conversion of biogas and natural gas into value-added products (e.g., chemicals and single-cell protein) in cold regions. Hence, isolation and genome sequencing of psychrophilic methanotrophic bacteria are needed to provide important data on their functional capabilities. However, psychrophilic methanotroph isolates and consequently their genome sequences are rare. Fortunately, Leibniz Institute, DSMZ-German Collection of Microorganisms and Cell Cultures GmbH was able to revive the long-extinct pure culture of a psychrophilic methanotrophic tundra soil isolate, Methylobacter psychrophilus Z-0021 (DSM 9914), from their stocks during 2022. Here, we describe the de novo assembled genome sequence of Methylobacter psychrophilus Z-0021 comprising a total of 4691082 bp in 156 contigs witha G + C content of 43.1% and 4074 coding sequences. The preliminary genome annotation analysis of Z-0021 identified genes encoding oxidation of methane, methanol and formaldehyde, assimilation of carbon and nitrate, and N2 fixation. In pair-wise genome-to-genome comparisons with closely related methanotrophic strains, the strain Z-0021 had an average nucleotide identity (ANI) of 92.9% and 78.2% and a digital DNA-DNA hybridization (dDDH) value of 50.6% and 22% with a recently described psychrophilic, lake isolate, Methylobacter sp. S3L5C and a psychrotrophic, arctic wetland soil isolate, Methylobacter tundripaludum SV96, respectively. In addition, the respective similarities between genomes of the strains ... |
author2 |
Natural Resources Institute Finland (Luke) Department of Bioproducts and Biosystems University of Tromso Tampere University Aalto-yliopisto Aalto University |
format |
Other/Unknown Material |
author |
Rissanen, Antti Juhani Mangayil, Rahul Svenning, Mette Marianne Khanongnuch, Ramita |
author_facet |
Rissanen, Antti Juhani Mangayil, Rahul Svenning, Mette Marianne Khanongnuch, Ramita |
author_sort |
Rissanen, Antti Juhani |
title |
Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) |
title_short |
Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) |
title_full |
Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) |
title_fullStr |
Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) |
title_full_unstemmed |
Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) |
title_sort |
draft genome sequence data of a psychrophilic tundra soil methanotroph, methylobacter psychrophilus z-0021 (dsm 9914) |
publisher |
Elsevier |
publishDate |
2022 |
url |
https://aaltodoc.aalto.fi/handle/123456789/119698 https://doi.org/10.1016/j.dib.2022.108689 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Tundra |
genre_facet |
Arctic Tundra |
op_relation |
Data in Brief Volume 45 Rissanen , A J , Mangayil , R , Svenning , M M & Khanongnuch , R 2022 , ' Draft genome sequence data of a psychrophilic tundra soil methanotroph, Methylobacter psychrophilus Z-0021 (DSM 9914) ' , Data in Brief , vol. 45 , 108689 . https://doi.org/10.1016/j.dib.2022.108689 2352-3409 PURE UUID: be3d028a-2fbb-4cef-b12c-746f398f255a PURE ITEMURL: https://research.aalto.fi/en/publications/be3d028a-2fbb-4cef-b12c-746f398f255a PURE FILEURL: https://research.aalto.fi/files/99632259/1_s2.0_S2352340922008940_main.pdf https://aaltodoc.aalto.fi/handle/123456789/119698 URN:NBN:fi:aalto-202302082048 doi:10.1016/j.dib.2022.108689 |
op_rights |
openAccess |
op_doi |
https://doi.org/10.1016/j.dib.2022.108689 |
container_title |
Data in Brief |
container_volume |
45 |
container_start_page |
108689 |
_version_ |
1766328805476007936 |