Drivers and scale dependency of plant-fungal-bacterial community co-assembly across the Arctic (2005-2021)

• Main Author: Ina Timling
• Format: Dataset
• Language: unknown
• Published: Arctic Data Center 2022
• Subjects: Arctic; bacteria; fungi; plants; co-assembly; scale-dependency; Calcarisporium arbuscula; Hamamotoa lignophila; Cutaneotrichosporon dermatis; Gymnopus androsaceus; Lenzites betulina; Arbusculina fragmentans; Agonimia allobata; Wallemia mellicola; Pseudoplectania episphagnum; Pseudoplectania nigrella; Sporothrix inflata; Seticyphella tenuispora; Sympoventuria capensis; Scopuloides rimosa; Coprinopsis cinerea; Piloderma lanatum; Atheniella flavoalba; Rutstroemia paludosa; Pholiota alnicola; Suillus subluteus; Bryobilimbia hypnorum; Glaciozyma martinii; Mucor racemosus; Polyblastia cruenta; Debaryomyces hansenii; Stegocintractia luzulae; Pseudephebe minuscula; Plenodomus influorescens; Meira argovae; Trichaptum fuscoviolaceum; Vishniacozyma victoriae; Exophiala spinifera; Rutstroemia bolaris; Piskurozyma capsuligena; Peziza echinospora; Dioszegia fristingensis; Tricholoma vaccinum; Meliniomyces bicolor; Aspergillus hiratsukae; Catapyrenium pilosellum; Vararia investiens; Aspergillus niger; Lactarius pubescens; Penicillium coprobium; Lactarius trivialis; Ganoderma applanatum; Boletinus sinuspaulianus; Veluticeps abietina; Endogone pisiformis; Hyphopichia burtonii; Hypomyces rosellus; Sporodictyon terrestre; Nephroma arcticum; Chrysomyxa ledicola; Tausonia pamirica; Phellinus noxius; Penicillium citrinum; Cladonia cariosa; Rhodotorula glutinis; Placopsis lambii; Cystodermella granulosa; Sarcinomyces crustaceus; Nidularia deformis; Suillus cavipes; Thamnogalla crombiei; Yarrowia lipolytica; Mucor hiemalis; Vulpicida pinastri; Mortierella alpina; Oidiodendron griseum; Fusarium ananatum; Malassezia globosa; Phanerochaete livescens; Slopeiomyces cylindrosporus; Candida palmioleophila; Ceratobasidium cereale; Trichosporon asahii; Cystoderma amianthinum; Preussia minipascua; Galerina sphagnorum; Limonomyces roseipellis; Ballistosporomyces sasicola; Peltigera scabrosa; Aspergillus caesiellus; Agaricus bisporus; Umbelopsis vinacea; Thelebolus ellipsoideus; Leciophysma saximontana; Morchella deliciosa; Amphinema byssoides; Marchandiomphalina foliacea; Polysporina subfuscescens; Microbotryum shastense; Lactarius rufus; Clavispora lusitaniae; Alectoria ochroleuca; Hyphodontiella multiseptata; Microbotryum vinosum; Hirsutella rhossiliensis; Toensbergia leucococca; Operculomyces laminatus; Blumeria graminis; Cladophialophora sylvestris; Gymnomyces ellipsosporus; Dactylaria lanosa; Fomitopsis pinicola; Cadophora luteo-olivacea; Sistotrema coronilla; Aspergillus pseudoglaucus; Olpidiaster brassicae; Microdochium majus; Fusarium arthrosporioides; Peniophora cinerea; Bensingtonia naganoensis; Trichosporon moniliiforme; Gloeoporus pannocinctus; Physconia muscigena; Tylospora asterophora; Arrhenia sphagnicola; Cystofilobasidium infirmominiatum; Kondoa changbaiensis; Rhodosporidiobolus colostri; Rhodocollybia maculata; Suillus grevillei; Kondoa malvinella; Isaria farinosa; Cetraria sepincola; Tilachlidium brachiatum; Cystofilobasidium capitatum; Leccinum versipelle; Verticillium albo-atrum; Dactylellina cionopaga; Cenococcum geophilum; Schizophyllum commune; Naganishia adeliensis; Geltingia associata; Bjerkandera adusta; Chytriomyces hyalinus; Daedaleopsis confragosa; Powellomyces hirtus; Rhymbocarpus neglectus; Micarea deminuta; Itersonilia perplexans; Pyrenochaeta cava; Polyblastia aurorae; Metapochonia suchlasporia; Panaeolus acuminatus; Meyerozyma guilliermondii; Catolechia wahlenbergii; Thecaphora oxytropis; Candida zeylanoides; Alternaria chlamydosporigena; Melanohalea septentrionalis; Microbotryum bistortarum; Gloeophyllum sepiarium; Coprinellus radians; Schizosaccharomyces pombe; Peltigera degenii; Tomentella viridula; Sydowia polyspora; Inocybe tjallingiorum; Mucor circinelloides; Penicillium bialowiezense; Curvibasidium cygneicollum; Curvibasidium pallidicorallinum; Umbelopsis isabellina; Peltigera hymenina; Mortierella parvispora; Daldinia loculata; Verrucaria margacea; Cyberlindnera jadinii; Microbotryum pustulatum; Pseudeurotium hygrophilum; Peltigera venosa; Fimetariella rabenhorstii; Fuscoporia ferrea; Hypholoma elongatum; Oidiodendron maius; Micarea assimilata; Vanrija fragicola; Thelephora terrestris; Trichoderma viride; Antrodia malicola; Buckleyzyma aurantiaca; Cladonia deformis; Filobasidium wieringae; Helicostylum elegans; Lecanicillium fusisporum; Penicillium infra-aurantiacum; Ischnoderma resinosum; Cladonia acuminata; Knufia peltigerae; Bryoria implexa; Gibellulopsis chrysanthemi; Wallemia muriae; Itersonilia pannonica; Vermiconia flagrans; Peltigera didactyla; Cladonia gracilis; Gaeumannomyces caricis; Udeniomyces puniceus; Gymnopus alpinus; Verticillium leptobactrum; Metapochonia bulbilosa; Cladonia merochlorophaea; Mrakia frigida; Cetraria aculeata; Polyblastia sendtneri; Spizellomyces punctatus; Rhodotorula mucilaginosa; Heterocephalacria bachmannii; Ustilentyloma graminis; Fomes fomentarius; Trametes ochracea; Bryochiton perpusillus; Mrakia robertii; Lentinula edodes; Udeniomyces kanasensis; Penicillium camemberti; Omphalina chionophila; Exophiala moniliae; Cylindrocarpon didymum; Saccharomyces cerevisiae; Cladonia pyxidata; Thanatephorus cucumeris; Mortierella gamsii; Fibulomyces fusoideus; Chromosera lilacina; Geopyxis carbonaria; Cadophora orchidicola; Cystofilobasidium macerans; Xeromphalina setulipes; Cystobasidium pinicola; Gowardia nigricans; Microcyclospora tardicrescens; Stereocaulon exutum; Pluteus romellii; Pezoloma ericae; Peltigera ponojensis; Coccomyces australis; Ascocoryne sarcoides; Eleutheromyces subulatus; Cerrena unicolor; Byssonectria deformis; Rachicladosporium antarcticum; Cadophora fastigiata; Cladonia pleurota; Penicillium kananaskense; Cystobasidium laryngis; Oidiodendron periconioides; Arrhenia philonotis; Candelariella aurella; Protopannaria pezizoides; Leucosporidium drummii; Chromosera citrinopallida; Gyalolechia desertorum; Peltigera rufescens; Schizonella melanogramma; Agrocybe praecox; Fellozyma inositophila; Biatora carneoalbida; Cystobasidium psychroaquaticum; Eonema pyriforme; Lactarius salicis-reticulatae; Peltigera leucophlebia; Ulkenomyces aestuarii; Phialocephala sphaeroides; Vishniacozyma dimennae; Lichenomphalia hudsoniana; Sporodictyon minutum; Cladonia mitis; Mortierella alliacea; Polyblastia schaereriana; Malassezia restricta; Cladonia uncialis; Cadophora malorum; Cystoderma jasonis; Tomentella sublilacina; Umbelopsis ramanniana; Bryochiton microscopicus; Arrhenia lobata; Rhodotorula toruloides; Penicillium atrosanguineum; Cladonia symphycarpia; Vishniacozyma carnescens; Bullera crocea; Mortierella macrocystis; Melampsora epitea; Tolypocladium cylindrosporum; Gymnopus aquosus; Athallia saxifragarum; Cadophora finlandica; Phialocephala fortinii; Mortierella minutissima; Alatospora acuminata; Leccinum variicolor; Phenoliferia psychrophenolica; Bannozyma yamatoana; Peltigera membranacea; Leucosporidium escuderoi; Leccinum scabrum; Filobasidium chernovii; Mortierella horticola; Zymoseptoria verkleyi; Phloeomana minutula; Placidiopsis pseudocinerea; Mycoblastus sanguinarius; Heydenia alpina; Mortierella fimbricystis; Bryoplaca tetraspora; Gyromitra esculenta; Cryptomyces maximus; Holtermanniella wattica; Arrhenia auriscalpium; Mrakia aquatica; Ambomucor seriatoinflatus; Candelariella antennaria; Naganishia albidosimilis; Articulospora atra; Peltigera aphthosa; Tetracladium setigerum; Solicoccozyma aeria; Flavocetraria cucullata; Leciophysma finmarkicum; Cryptodiscus gloeocapsa; Caloplaca cerina; Cladonia stygia; Thamnolia vermicularis; Mortierella sarnyensis; Cladonia subulata; Infundichalara microchona; Bryochiton monascus; Toninia coelestina; Helvellosebacina helvelloides; Leccinum holopus; Russula claroflava; Rickenella fibula; Peltigera extenuata; Cladonia arbuscula; Incertomyces vagans; Lecidella wulfenii; Dioszegia hungarica; Cantharellopsis prescotii; Neodevriesia capensis; Mucor abundans; Tomentellopsis submollis; Cetrariella delisei; Nadsonia commutata; Mortierella clonocystis; Parvoplaca athallina; Peltigera neckeri; Trichoderma oblongisporum; Parascutellinia carneosanguinea; Blastenia ammiospila; Baeomyces rufus; Naganishia friedmannii; Odontia fibrosa; Microdochium lycopodinum; Atla alpina; Rachicladosporium monterosium; Lichenomphalia alpina; Wilcoxina rehmii; Ochrolechia frigida; Bryoria nitidula; Arrhenia velutipes; Bilimbia sabuletorum; Sporormiella intermedia; Cadophora viticola; Meliniomyces vraolstadiae; Peltigera canina; Lactarius lanceolatus; Polyblastia dimidiata; Bradymyces alpinus; Cetraria islandica; Penicillium ribium; Mortierella antarctica; Oleoguttula mirabilis; Pseudogymnoascus pannorum; Toninia aromatica; Umbelopsis angularis; Lactarius glyciosmus; Mrakia cryoconiti; Tomentella lilacinogrisea; Bilimbia lobulata; Mortierella pulchella; Stereocaulon evolutum; Geopora nicaeensis; Geopora sepulta; Multiclavula corynoides; Atla tibelliorum; Comoclathris sedi; Cladonia subfurcata; Cladophialophora minutissima; Mycosymbioces mycenaphila; Pseudotomentella tristis; Lichenomphalia umbellifera; Goffeauzyma gastrica; Bunodophoron melanocarpum; Cladonia coniocraea; Titaea maxilliformis; Laccaria laccata; Mortierella elongata; Russula pascua; Tomentella badia; Abietinella abietina; Alloina brevirostris; Alopecurus borealis; Amblystegium longicuspus; Amblystegium serpens; Anaptychia bryorum; Anastrophyllum minutum; Andromeda polifolia; Androsace chamaejasme; Aneura pinguis; Anthelia juratzkana; Aplodon wormskjoldii; Arctagrostis latifolia; Arctous alpina; Arctous rubra; Arnellia fennica; Artemisia borealis; Aulacomnium palustre; Aulacomnium turgidum; Barbilophozia barbata; Barbilophozia binsteadii; Barbilophozia hyperborea; Barbilophozia kunzeana; Bartramia ithyphylla; Betula nana; Bistorta plumosa; Bistorta vivipara; Blepharostoma trichophyllum; Brachythecium mildeanum; Bryoerythrophyllum recurvirostre; Bryum arcticum; Bryum argenteum; Bryum cryophilum; Bryum pseudotriquetrum; Bryum rutilans; Bryum teres; Bryum wrightii; Calamagrostis canadensis; Calamagrostis holmii; Callialaria curvicaule; Calliergon stramineum; Campylium arcticum; Campylium stellatum; Cardamine digitata; Carex aquatilis; Carex atrofusca; Carex bigelowii; Carex capillaris; Carex membranacea; Carex rariflora; Carex rupestris; Carex scirpoidea; Carex vaginata; Catoscopium nigritum; Cephalozia bicuspidata; Cephaloziella grimsulana; Cephaloziella varians; Cerastium arcticum; Cerastium beeringianum; Cerastium regelii; Ceratodon heterophyllus; Ceratodon purpureus; Cinclidium latifolium; Cirriphyllum cirrosum; Cochlearia groenlandica; Cochlearia officinalis; Conostomum tetragonum; Cratoneuron curvicaule; Cryptocolea imbricata; Ctenidium molluscum; Ctenidium procerrimum; Cyrtomnium hymenophylloides; Deschampsia sukatschewii; Dicranella subulata; Dicranum acutifolium; Dicranum angustum; Dicranum elongatum; Dicranum fragilifolium; Dicranum fuscescens; Dicranum groenlandicum; Dicranum laevidens; Dicranum spadiceum; Dicranum undulatum; Didymodon asperifolius; Didymodon icmadophilus; Didymodon rigidulus; Didymodon spadiceus; Distichium capillaceum; Distichium inclinatum; Ditrichum flexicaule; Draba alpina; Draba cinerea; Draba nivalis; Draba pauciflora; Draba subcapitata; Dryas octopetala; Empetrum nigrum; Encalypta alpina; Encalypta longicolla; Encalypta procera; Encalypta rhaptocarpa; Equisetum arvense; Equisetum variegatum; Eriophorum angustifolium; Eriophorum scheuchzeri; Eriophorum triste; Eriophorum vaginatum; Eurhynchium pulchellum; Festuca baffinensis; Festuca brachyphylla; Festuca hyperborea; Gymnomitrion concinnatum; Gymnomitrion corallioides; Hennediella heimii; Hennediella heimii vararctica; Hulteniella integrifolia; Hylocomium splendens; Hypnum bambergeri; Hypnum holmenii; Hypnum revolutum; Hypnum subimponens; Hypnum vaucheri; Isopterygiopsis pulchella; Juncus biglumis; Jungermania confertissima; Jungermannia polaris; Kobresia myosuroides; Leiocolea collaris; Leptobryum pyriforme; Lloydia serotina; Lophozia excisa; Lophozia jurensis; Lophozia polaris; Lophozia ventricosa; Luzula confusa; Luzula nivalis; Meesia uliginosa; Micranthes foliolosa; Micranthes hieraciifolia; Micranthes nelsoniana; Micranthes nivalis; Minuartia arctica; Minuartia rossii; Mnium marginatum; Mnium thomsonii; Myurella julacea; Myurella tenerrima; Nardia japonica; Oncophorus compactus; Oncophorus virens; Oncophorus wahlenbergii; Orthothecium chryseon; Orthothecium chryseum; Orthothecium strictum; Orthothecium varia; Orthotrichum speciosum; Oxyria digyna; Oxytropis arctobia; Oxytropis borealis; Oxytropis maydelliana; Pachypleurum alpinum; Papaver dahlianum; Papaver macounii; Parrya arctica; Parrya nudicaulis; Pedicularis albolabiata; Pedicularis capitata; Pedicularis hirsuta; Pedicularis labradorica; Pedicularis lanata; Pedicularis langsdorffii; Pedicularis lapponica; Pedicularis oederi; Pedicularis sudetica; Petasites frigidus; Philonotis tomentella; Phippsia algida; Physaria arctica; Plagiochila asplenioides; Plagiothecium berggrenianum; Pleurozium schreberi; Poa abbreviata; Poa arctica; Pogonatum dentatum; Pogonatum urnigerum; Pohlia beringiensis; Pohlia cruda; Pohlia drummondii; Pohlia nutans; Polemonium acutiflorum; Polytrichastrum alpinum; Polytrichum commune; Polytrichum hyperboreum; Polytrichum piliferum; Polytrichum strictum; Potentilla hyparctica; Potentilla nivea; Potentilla uniflora; Potentilla vahliana; Pseudocalliergon brevifolius; Psilopilum cavifolium; Pterygoneurum ovatum; Ptilidium ciliare; Ptilidium crista cristensis; Ptilidium pulchrum; Puccinellia andersonii; Puccinellia angustata; Racomitrium canescens; Racomitrium lanuginosum; Racomitrium panschii; Radula prolifera; Ranunculus nivalis; Ranunculus sabinei; Rhytidium rugosum; Rubus chamaemorus; Rumex arcticus; Sagina nivalis; Salix arctica; Salix glauca; Salix hastata; Salix lanata; Salix nummularia; Salix phylicifolia; Salix polaris; Salix pulchra; Salix reptans; Salix reticulata; Salix richardsonii; Sanionia uncinata; Saussurea angustifolia; Saxifraga cernua; Saxifraga cespitosa; Saxifraga oppositifolia; Saxifraga rivularis; Saxifraga setigera; Scapania obcordata; Scapania scandica; Schistidium frigidum; Schistidium papillosum; Scorpidium scorpioides; Silene acaulis; Sphagnum angustifolium; Sphagnum balticum; Sphagnum girgensohnii; Sphagnum lenense; Sphagnum majus; Sphagnum rubellum; Sphagnum squarrosum; Sphagnum teres; Sphagnum warnstorfii; Sphenolobus minutus; Splachnum sphaericum; Splachnum vasculosum; Stellaria longipes; Stellaria longipes edwardsii; Straminergon stramineum; Tephroseris atropurpurea; Tetraplodon mnioides; Tetraplodon urceolatus; Timmia austriaca; Tofieldia coccinea; Tofieldia pusilla; Tomentypnum nitens; Tortella arctica; Tortella fragilis; Tortella tortuosa; Tortula leucostoma; Tortula mucronifolia; Tortula ruralis; Trisetum spicatum; Tritomaria quinquedentata; Vaccinium uliginosum; Vaccinium vitis-idaea; Valeriana capitata; Warnstorfia pseudostraminea; Warnstorfia sarmentosa; Kiaeri blyttii; Sanioni georgicouncinata; Cardamine bellidifolia var. bellidifolia; Didymodon rigidulus var. icmadophilus; Festuca ovina var. ovina; Lophozia sudetica var. anomala; Lophozia sudetica var. sudetica; Polytrichastrum alpinum var. fragile; Ranunculus sulphureus var. sulphureus; Salix ovalifolia var. ovalifolia; Timmia megapolitana var. bavarica; Braya glabella var. purpurascens; Carex fuliginosa var. misandra; Cassiope tetragona var. tetragona; Dryas integrifolia var. integrifolia; Elymus alaskanus var. hyperarcticus; Papaver radicatum var. radicatum; Poa pratensis var. alpigena; Rhododendron tomentosum var. decumbens; Silene uralensis var. uralensis; Alectoria; Canada; Ellef Ringnes Island; Happy Valley; Hayes; Hayes Island; Howe Island; Isachsen; Kharasavey; Laborovaya; Mould Bay; Nivea; Northwest Territories; Prince Patrick Island; Yamal Peninsula; Antarc*; Antarctica; Banks Island; Cassiope tetragona; Eriophorum; Papaver radicatum; Ranunculus sulphureus; Alaska
• Online Access: https://search.dataone.org/view/urn:uuid:14b9bd58-5872-425f-8825-d4fb055c514c

Despite considerable attention to biodiversity patterns in the face of global change, it remains unknown whether the same ecological drivers shape patterns of diversity in prokaryotes versus eukaryotes and in microscopic, small and large organisms. Plants (large, eukaryotic), fungi (small, eukaryotic) and bacteria (microscopic, prokaryotic) interact intensively belowground and can reciprocally affect community compositions of the other kingdoms. Their combined interactions and activities comprise the nexus of ecosystem function in terrestrial biomes. This study examined the fundamental ecological drivers of community assembly (dispersal, environmental filtering, competition, facilitation, niche partitioning, neutral processes) of plant-fungal-bacterial (PFB) communities across hierarchical spatial and ecological scales in the Arctic. We used Illumina sequencing to analyze the fungal and bacterial communities from over 3500 soil samples collected at 11 sites along two latitudinal transects in North America and Eurasia. Each transect includes all five bioclimatic subzones and spans 1700 kilometers (km) North to South. Furthermore, we obtained plant community and environmental data from all sampling sites to address a series of hypotheses about the drivers of alpha and beta diversity as well as community composition separately and jointly across plants, fungi and bacteria. Here we present the assembled plant, fungal, bacterial and environmental data sets. We sampled the plants, environments and soils in the field from 2005 to 2010, and analyses of soil fungi (all the molecular work and processing of sequences and bioinformatics) were conducted from 2013 to 2021, for a total range of 2005-2021.