Single Nucleotide Polymorphism (SNP) data from Palumbi laboratory at Stanford University Hopkins Marine Station from 2010 to 2013 (OMEGAS-MaS project)

• Main Authors: Stephen R. Palumbi, Kristen Milligan
• Format: Dataset
• Language: unknown
• Published: Biological and Chemical Oceanography Data Management Office (BCO-DMO) 2013
• Subjects: oceans; Ocean acidification
• Online Access: https://search.dataone.org/view/sha256:d030da12612ee6b3c748f2a542538399c519856ce57d4f3a283fc135c761dae0

<p>Single Nucleotide Polymorphism for each of the <em>Strongylocentrotus </em><em>purpuratus</em> genes from the GLEAN3 genome build.</p> <p>Data structure: Fractions are allele frequency values. Location, Day samples (D1 or D7), and CO2 level (385 or 1000) are listed.</p> <p>Data are for each of the <em>S. purpuratus</em> genes from the GLEAN3 genome build.</p> <pre> <strong>Parameter Names/Definitions:</strong> GLEAN ID: ID code POS: base position Random trails larger than observed value (running record): no units <em>Sample ID code format: State_Site_Tidal Height_:</em> OR: Oregon FC: Fogarty Creek Site ST: Strawberry Hill BD: Bodega Bay NC: Northern California VD: Van Damme CC: Central California SH: Sand Hill Bluff TP: Terrace Point SB: Santa Barbara region AL: Alegria </pre> <p><strong>Resulting Publications:</strong><br /> 2013. Pespeni, M. E. Sanford, B. Gaylord, T. M. Hill, J. D. Hosfelt, H. Jaris, M. LaVigne, E. Lenz, A. D. Russell, M. K. Young, S. R. Palumbi^. Evolutionary change during experimental ocean acidification. Published online before print April 8, 2013, <a href=\"http://dx.doi.org/10.1073/pnas.1220673110\">http://dx.doi.org/10.1073/pnas.1220673110</a></p> <p>Pespeni MH, Barney BT, Palumbi SR (2012) Differences in the regulation of growth and biomineralization genes revealed through long-term common garden acclimation and experimental genomics in the purple sea urchin. Evolution 67(7): 1901–1914. <a href=\"http://dx.doi.org/10.1111/evo.12036\">doi:10.1111/evo.12036</a></p>