GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project)
<p>Sequence data from this research are available on Genbank with metadata (sample location, depth, date etc.) and accession numbers listed in the publications given below. Details of molecular work are also described in the various publications listed below.</p> <p>Refer...
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Biological and Chemical Oceanography Data Management Office (BCO-DMO)
2016
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Online Access: | https://search.dataone.org/view/sha256:66416e769d6a8879fafcc1120a4428822c705a11093cd01c28ba15790e8844a6 |
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openpolar |
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Open Polar |
collection |
Biological and Chemical Oceanography Data Management Office (BCO-DMO) (via DataONE) |
op_collection_id |
dataone:urn:node:BCODMO |
language |
unknown |
topic |
biota, oceans |
spellingShingle |
biota, oceans Ron J. Etter GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) |
topic_facet |
biota, oceans |
description |
<p>Sequence data from this research are available on Genbank with metadata (sample location, depth, date etc.) and accession numbers listed in the publications given below. Details of molecular work are also described in the various publications listed below.</p> <p>Refer to publications:<br /> Glazier, A.E., and Etter, R.J. 2014. Cryptic speciation along a bathymetric gradient. Biological Journal of the Linnean Society, 113:897-913. doi:<a href=\"http://dx.doi.org/10.1111/bij.12389\" target=\"_blank\">10.1111/bij.12389</a><br /> <strong>Sequences were deposited in GenBank under accession numbers KM102340-KM102448.</strong></p> <p>Jennings R.M., and Etter, R.J. 2014. Phylogeographic estimates of colonization of the deep Atlantic by the protobranch bivalve <em>Nucula atacellana. </em>Polish Polar Research, 35: 261-278. Invited Paper. doi:<a href=\"http://dx.doi.org/10.2478/popore-2014-0017\" target=\"_blank\">10.2478/popore-2014-0017</a><br /> <strong>New sequences generated in this work were deposited in GenBank under Accessions KJ950184–KJ950282 (Table 1).</strong></p> <p>Boyle, E.E. and Etter, R.J. 2013. Heteroplasmy in a deep-sea protobranch bivalve suggests an ancient origin of doubly uniparental inheritance of mitochondria in Bivalvia. Marine Biology, 160:413-422. doi:<a href=\"http://dx.doi.org/10.1007/s00227-012-2099-y\" target=\"_blank\">10.1007/s00227-012-2099-y</a><br /> <strong>Sequences from this study are available from GenBank (Accession numbers 16S HQ907887–HQ907914; cytb JX435273–JX435297).</strong></p> <p>Jennings R.M., Etter, R.J. and Ficarra,L. 2013. Population differentiation and species formation in the deep sea: the potential role of environmental gradients and depth. PLoS ONE<em>, </em>8(10): e77594. doi:<a href=\"http://dx.doi.org/10.1371/journal.pone.0077594\" target=\"_blank\">10.1371/journal.pone.0077594</a><br /> <strong>All sequences were deposited in GenBank (Accessions KC563091-KC563901, Table 2).</strong></p> <p>Sharma, P.P., Zardus, J.D., Boyle, E.E., González, V.L., Jennings, R.M., McIntyre, E., Bouchet, P., Wheeler, W.C., Etter, R.J., and Giribet, G. 2013. Into the deep: A phylogenetic approach to the bivalve subclass Protobranchia. Molecular Phylogenetics and Evolution, 69:188-204. doi:<a href=\"http://dx.doi.org/10.1016/j.ympev.2013.05.018\" target=\"_blank\">10.1016/j.ympev.2013.05.018</a><br /> <strong>Sequences from this study are available from GenBank (Accession numbers given in Table 2).</strong></p> <p>Etter, R.J., Boyle, E.E., Glazier, A., Jennings, R.M., Dutra, E., and Chase, M.R. 2011. Phylogeography of a pan-Atlantic abyssal protobranch bivalve: Implications for evolution in the deep Atlantic. Molecular Ecology,<em> </em>20:829-843. doi:<a href=\"http://dx.doi.org/10.1111/j.1365-294X.2010.04978.x\" target=\"_blank\">10.1111/j.1365-294X.2010.04978.x</a><br /> <strong>Sequences from this study are available from GenBank - accession numbers are HQ452629–HQ452677.</strong></p> <p>Jennings, R.M., and Etter, R.J. 2011. Exon-Primed, Intron-Crossing (EPIC) loci for five nuclear genes in deep-sea protobranch bivalves: primer design, PCR protocols, and locus utility. Molecular Ecology Resources, 11:1102-1112. doi:<a href=\"http://dx.doi.org/10.1111/j.1755-0998.2011.03038.x\" target=\"_blank\">10.1111/j.1755-0998.2011.03038.x</a><br /> <strong>DNA Sequences from this study are available from GenBank - Accessions JF410881– JF411003.</strong></p> |
format |
Dataset |
author |
Ron J. Etter |
author_facet |
Ron J. Etter |
author_sort |
Ron J. Etter |
title |
GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) |
title_short |
GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) |
title_full |
GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) |
title_fullStr |
GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) |
title_full_unstemmed |
GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) |
title_sort |
genbank accession numbers for sequences from deep-sea protobranch bivalves collected on r/v endeavor cruise en447 in the western north atlantic (34?39n, 68-70w) in 2008 (ev deep sea molluscs ii project) |
publisher |
Biological and Chemical Oceanography Data Management Office (BCO-DMO) |
publishDate |
2016 |
url |
https://search.dataone.org/view/sha256:66416e769d6a8879fafcc1120a4428822c705a11093cd01c28ba15790e8844a6 |
long_lat |
ENVELOPE(72.556,72.556,-70.145,-70.145) ENVELOPE(-153.000,-153.000,-87.283,-87.283) |
geographic |
Jennings McIntyre |
geographic_facet |
Jennings McIntyre |
genre |
North Atlantic Polish Polar Research |
genre_facet |
North Atlantic Polish Polar Research |
_version_ |
1800875646651465728 |
spelling |
dataone:sha256:66416e769d6a8879fafcc1120a4428822c705a11093cd01c28ba15790e8844a6 2024-06-03T18:47:05+00:00 GenBank accession numbers for sequences from deep-sea protobranch bivalves collected on R/V Endeavor cruise EN447 in the Western North Atlantic (34?39N, 68-70W) in 2008 (Ev Deep Sea Molluscs II project) Ron J. Etter 2016-09-23T00:00:00Z https://search.dataone.org/view/sha256:66416e769d6a8879fafcc1120a4428822c705a11093cd01c28ba15790e8844a6 unknown Biological and Chemical Oceanography Data Management Office (BCO-DMO) biota, oceans Dataset 2016 dataone:urn:node:BCODMO 2024-06-03T18:08:43Z <p>Sequence data from this research are available on Genbank with metadata (sample location, depth, date etc.) and accession numbers listed in the publications given below. Details of molecular work are also described in the various publications listed below.</p> <p>Refer to publications:<br /> Glazier, A.E., and Etter, R.J. 2014. Cryptic speciation along a bathymetric gradient. Biological Journal of the Linnean Society, 113:897-913. doi:<a href=\"http://dx.doi.org/10.1111/bij.12389\" target=\"_blank\">10.1111/bij.12389</a><br /> <strong>Sequences were deposited in GenBank under accession numbers KM102340-KM102448.</strong></p> <p>Jennings R.M., and Etter, R.J. 2014. Phylogeographic estimates of colonization of the deep Atlantic by the protobranch bivalve <em>Nucula atacellana. </em>Polish Polar Research, 35: 261-278. Invited Paper. doi:<a href=\"http://dx.doi.org/10.2478/popore-2014-0017\" target=\"_blank\">10.2478/popore-2014-0017</a><br /> <strong>New sequences generated in this work were deposited in GenBank under Accessions KJ950184–KJ950282 (Table 1).</strong></p> <p>Boyle, E.E. and Etter, R.J. 2013. Heteroplasmy in a deep-sea protobranch bivalve suggests an ancient origin of doubly uniparental inheritance of mitochondria in Bivalvia. Marine Biology, 160:413-422. doi:<a href=\"http://dx.doi.org/10.1007/s00227-012-2099-y\" target=\"_blank\">10.1007/s00227-012-2099-y</a><br /> <strong>Sequences from this study are available from GenBank (Accession numbers 16S HQ907887–HQ907914; cytb JX435273–JX435297).</strong></p> <p>Jennings R.M., Etter, R.J. and Ficarra,L. 2013. Population differentiation and species formation in the deep sea: the potential role of environmental gradients and depth. PLoS ONE<em>, </em>8(10): e77594. doi:<a href=\"http://dx.doi.org/10.1371/journal.pone.0077594\" target=\"_blank\">10.1371/journal.pone.0077594</a><br /> <strong>All sequences were deposited in GenBank (Accessions KC563091-KC563901, Table 2).</strong></p> <p>Sharma, P.P., Zardus, J.D., Boyle, E.E., González, V.L., Jennings, R.M., McIntyre, E., Bouchet, P., Wheeler, W.C., Etter, R.J., and Giribet, G. 2013. Into the deep: A phylogenetic approach to the bivalve subclass Protobranchia. Molecular Phylogenetics and Evolution, 69:188-204. doi:<a href=\"http://dx.doi.org/10.1016/j.ympev.2013.05.018\" target=\"_blank\">10.1016/j.ympev.2013.05.018</a><br /> <strong>Sequences from this study are available from GenBank (Accession numbers given in Table 2).</strong></p> <p>Etter, R.J., Boyle, E.E., Glazier, A., Jennings, R.M., Dutra, E., and Chase, M.R. 2011. Phylogeography of a pan-Atlantic abyssal protobranch bivalve: Implications for evolution in the deep Atlantic. Molecular Ecology,<em> </em>20:829-843. doi:<a href=\"http://dx.doi.org/10.1111/j.1365-294X.2010.04978.x\" target=\"_blank\">10.1111/j.1365-294X.2010.04978.x</a><br /> <strong>Sequences from this study are available from GenBank - accession numbers are HQ452629–HQ452677.</strong></p> <p>Jennings, R.M., and Etter, R.J. 2011. Exon-Primed, Intron-Crossing (EPIC) loci for five nuclear genes in deep-sea protobranch bivalves: primer design, PCR protocols, and locus utility. Molecular Ecology Resources, 11:1102-1112. doi:<a href=\"http://dx.doi.org/10.1111/j.1755-0998.2011.03038.x\" target=\"_blank\">10.1111/j.1755-0998.2011.03038.x</a><br /> <strong>DNA Sequences from this study are available from GenBank - Accessions JF410881– JF411003.</strong></p> Dataset North Atlantic Polish Polar Research Biological and Chemical Oceanography Data Management Office (BCO-DMO) (via DataONE) Jennings ENVELOPE(72.556,72.556,-70.145,-70.145) McIntyre ENVELOPE(-153.000,-153.000,-87.283,-87.283) |