Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water.
<p><strong>Location: </strong>Water samples were collected in August of 2013 from the Bering Strait (BSt) chlorophyll maximum layer (7 m depth, 65°43.44″ N, 168°57.42″ W) and from the more northern Chukchi Sea (CS) bottom waters (55.5 m depth, 72°47.624″ N, 16°53...
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Biological and Chemical Oceanography Data Management Office (BCO-DMO)
2017
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dataone:sha256:57d509e0afc542d96366e28de3b061c3623b332811ba444afa50c32dce396d32 2024-06-03T18:46:47+00:00 Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. William S. Noble Brook L. Nunn 2017-11-13T00:00:00Z https://search.dataone.org/view/sha256:57d509e0afc542d96366e28de3b061c3623b332811ba444afa50c32dce396d32 unknown Biological and Chemical Oceanography Data Management Office (BCO-DMO) biota, oceans Dataset 2017 dataone:urn:node:BCODMO 2024-06-03T18:12:10Z <p><strong>Location: </strong>Water samples were collected in August of 2013 from the Bering Strait (BSt) chlorophyll maximum layer (7 m depth, 65°43.44″ N, 168°57.42″ W) and from the more northern Chukchi Sea (CS) bottom waters (55.5 m depth, 72°47.624″ N, 16°53.89″ W) using a 24-bottle CTD (conductivity, temperature, and depth) rosette (10 L General Oceanics Niskin X). The measurement of integrated water column chlorophyll was 226.88 mg/m2 at station BSt and 2.64 mg/m2 at station CS.</p> <p>Water was collected on ship, filtered, and bacterial fractions were lysed, digested and analyzed using proteomic mass spectrometry.</p> <p>Cruise = BEST Cruise 2013</p> <p>Data are available for download at the EBI PRIDE Archive. Project number = PXD006472.</p> <pre> Homepage: <a href=\"http://www.ebi.ac.uk/pride/archive\" target=\"_blank\">http://www.ebi.ac.uk/pride/archive</a> Project URL: <a href=\"http://www.ebi.ac.uk/pride/archive/projects/PXD006472\" target=\"_blank\">http://www.ebi.ac.uk/pride/archive/projects/PXD006472</a> Data URL: <a href=\"http://www.ebi.ac.uk/pride/archive/projects/PXD006472/files\" target=\"_blank\">http://www.ebi.ac.uk/pride/archive/projects/PXD006472/files</a></pre> <p>Data are published in May, D.H., Timmins-Schiffman, E., Mikan, M.P., Harvey, H.R., Borenstein, E., Nunn, B.L., Noble, W.S. (2016) An alignment-free \"metapeptide\" strategy for metaproteomic characterization of microbiome samples using shotgun metagenomic sequencing. Journal of Proteome Research 15, 2697-2705. DOI: <a href=\"http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.6b00239\" target=\"_blank\">10.1021/acs.jproteome.6b00239</a></p> Dataset Bering Strait Chukchi Chukchi Sea Biological and Chemical Oceanography Data Management Office (BCO-DMO) (via DataONE) Chukchi Sea Bering Strait |
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Open Polar |
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Biological and Chemical Oceanography Data Management Office (BCO-DMO) (via DataONE) |
op_collection_id |
dataone:urn:node:BCODMO |
language |
unknown |
topic |
biota, oceans |
spellingShingle |
biota, oceans William S. Noble Brook L. Nunn Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. |
topic_facet |
biota, oceans |
description |
<p><strong>Location: </strong>Water samples were collected in August of 2013 from the Bering Strait (BSt) chlorophyll maximum layer (7 m depth, 65°43.44″ N, 168°57.42″ W) and from the more northern Chukchi Sea (CS) bottom waters (55.5 m depth, 72°47.624″ N, 16°53.89″ W) using a 24-bottle CTD (conductivity, temperature, and depth) rosette (10 L General Oceanics Niskin X). The measurement of integrated water column chlorophyll was 226.88 mg/m2 at station BSt and 2.64 mg/m2 at station CS.</p> <p>Water was collected on ship, filtered, and bacterial fractions were lysed, digested and analyzed using proteomic mass spectrometry.</p> <p>Cruise = BEST Cruise 2013</p> <p>Data are available for download at the EBI PRIDE Archive. Project number = PXD006472.</p> <pre> Homepage: <a href=\"http://www.ebi.ac.uk/pride/archive\" target=\"_blank\">http://www.ebi.ac.uk/pride/archive</a> Project URL: <a href=\"http://www.ebi.ac.uk/pride/archive/projects/PXD006472\" target=\"_blank\">http://www.ebi.ac.uk/pride/archive/projects/PXD006472</a> Data URL: <a href=\"http://www.ebi.ac.uk/pride/archive/projects/PXD006472/files\" target=\"_blank\">http://www.ebi.ac.uk/pride/archive/projects/PXD006472/files</a></pre> <p>Data are published in May, D.H., Timmins-Schiffman, E., Mikan, M.P., Harvey, H.R., Borenstein, E., Nunn, B.L., Noble, W.S. (2016) An alignment-free \"metapeptide\" strategy for metaproteomic characterization of microbiome samples using shotgun metagenomic sequencing. Journal of Proteome Research 15, 2697-2705. DOI: <a href=\"http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.6b00239\" target=\"_blank\">10.1021/acs.jproteome.6b00239</a></p> |
format |
Dataset |
author |
William S. Noble Brook L. Nunn |
author_facet |
William S. Noble Brook L. Nunn |
author_sort |
William S. Noble |
title |
Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. |
title_short |
Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. |
title_full |
Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. |
title_fullStr |
Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. |
title_full_unstemmed |
Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. |
title_sort |
shotgun metaproteomics of bering strait surface water and chukchi sea bottom water. |
publisher |
Biological and Chemical Oceanography Data Management Office (BCO-DMO) |
publishDate |
2017 |
url |
https://search.dataone.org/view/sha256:57d509e0afc542d96366e28de3b061c3623b332811ba444afa50c32dce396d32 |
geographic |
Chukchi Sea Bering Strait |
geographic_facet |
Chukchi Sea Bering Strait |
genre |
Bering Strait Chukchi Chukchi Sea |
genre_facet |
Bering Strait Chukchi Chukchi Sea |
_version_ |
1800871027445596160 |