Population genomics study on the planktonic copepod Haloptilus longicornis: RADSeq data and metadata (Plankton Population Genetics project)

• Main Author: Erica Goetze
• Format: Dataset
• Language: unknown
• Published: Biological and Chemical Oceanography Data Management Office (BCO-DMO) 2017
• Subjects: Genome concordance, Haloptilus longicornis, holoplankton, RADseq, sympatric speciation, zooplankton, biota, oceans; North Atlantic
• Online Access: https://search.dataone.org/view/sha256:16d24f7ac11138bf5e353a84b151601d84583cff1ba044828a38a1c4211e31b4

<p>This data submission consists of specimen collection information and next-generation sequencing data (Illumina MiSeq v3 - 300bp PE reads) from pooled DNA libraries of three putative Haloptilus longicornis clades that have sympatric distributions in the North Atlantic Ocean. Specimens were collected during the 2010 Atlantic Meridional Transect cruise (AMT20). 113 total H. longicornis were pooled into three clades as defined by reciprocal monophly and fixed differences in mtDNA cytochrome oxidase c subunit II. The aim of this project is to utilize reduced representation genomic data to assess whether there is concordance between the three putative H. longicornis clades demarcated with mtCOII and clades determined using other regions of the genome. Earlier work indicates only two clades are detected using microsatellite loci, and this project will broaden the genomic scope of that investigation.</p> <p>The sequences are archived at NCBI, BioProject&nbsp;PRJNA369182&nbsp;[https://www.ncbi.nlm.nih.gov/bioproject/PRJNA369182]</p> <p>The publisher requires that this item is embargoed until <strong>2018-01-01</strong>. Please check back after <strong>2018-01-01</strong>.</p>