Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015
The file contains sequence alignments (population data) of individual phantom midges from permanent ponds, (Chaoborus spp.) and their associated RNA viruses ( Orthophasmaviridae: Kigluaik phantom virus or KIGV, Nome phantom virus or NOMV). The host sequences are from two genes from the mitochondrial...
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Arctic Data Center
2017
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Online Access: | https://doi.org/10.18739/A2RV0D15F |
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dataone:doi:10.18739/A2RV0D15F 2024-06-03T18:46:40+00:00 Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015 Derek Taylor Seward Penisula, AK Baffin Island, Canada ENVELOPE(-166.1317,-164.8642,65.4094,64.8972) BEGINDATE: 2011-07-01T00:00:00Z ENDDATE: 2015-08-01T00:00:00Z 2017-08-10T00:00:00Z https://doi.org/10.18739/A2RV0D15F unknown Arctic Data Center Chaoborus trivittatus Chaoborus cf. flavicans Kigluiak phantom orthophasmavirus Nome phantom orthophasmavirus Dataset 2017 dataone:urn:node:ARCTIC https://doi.org/10.18739/A2RV0D15F 2024-06-03T18:16:24Z The file contains sequence alignments (population data) of individual phantom midges from permanent ponds, (Chaoborus spp.) and their associated RNA viruses ( Orthophasmaviridae: Kigluaik phantom virus or KIGV, Nome phantom virus or NOMV). The host sequences are from two genes from the mitochondrial genome while the viral sequences are from all four genes in their respective genomes. To preserve annotations, the alignment data files are in the Sequin format (freely available from NCBI). All files are readily converted to the FASTA format within Sequin. Virus prevalence data are given for 25 ponds (and a five year window for one site). Also virus screening data (from reverse transcription PCR) for non-midge arctic zooplankters are given. Study ponds (co-ordinates are provided in a file ) are both recent thaw and glacial ponds on the Seward Peninsula, AK, and Baffin Island, Canada. Dataset Arctic Baffin Island Baffin Seward Peninsula Subarctic Zooplankton Arctic Data Center (via DataONE) Arctic Baffin Island Canada ENVELOPE(-166.1317,-164.8642,65.4094,64.8972) |
institution |
Open Polar |
collection |
Arctic Data Center (via DataONE) |
op_collection_id |
dataone:urn:node:ARCTIC |
language |
unknown |
topic |
Chaoborus trivittatus Chaoborus cf. flavicans Kigluiak phantom orthophasmavirus Nome phantom orthophasmavirus |
spellingShingle |
Chaoborus trivittatus Chaoborus cf. flavicans Kigluiak phantom orthophasmavirus Nome phantom orthophasmavirus Derek Taylor Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015 |
topic_facet |
Chaoborus trivittatus Chaoborus cf. flavicans Kigluiak phantom orthophasmavirus Nome phantom orthophasmavirus |
description |
The file contains sequence alignments (population data) of individual phantom midges from permanent ponds, (Chaoborus spp.) and their associated RNA viruses ( Orthophasmaviridae: Kigluaik phantom virus or KIGV, Nome phantom virus or NOMV). The host sequences are from two genes from the mitochondrial genome while the viral sequences are from all four genes in their respective genomes. To preserve annotations, the alignment data files are in the Sequin format (freely available from NCBI). All files are readily converted to the FASTA format within Sequin. Virus prevalence data are given for 25 ponds (and a five year window for one site). Also virus screening data (from reverse transcription PCR) for non-midge arctic zooplankters are given. Study ponds (co-ordinates are provided in a file ) are both recent thaw and glacial ponds on the Seward Peninsula, AK, and Baffin Island, Canada. |
format |
Dataset |
author |
Derek Taylor |
author_facet |
Derek Taylor |
author_sort |
Derek Taylor |
title |
Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015 |
title_short |
Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015 |
title_full |
Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015 |
title_fullStr |
Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015 |
title_full_unstemmed |
Zooplankton-phasmavirus population genetic and prevalence data in Subarctic ponds, 2011-2015 |
title_sort |
zooplankton-phasmavirus population genetic and prevalence data in subarctic ponds, 2011-2015 |
publisher |
Arctic Data Center |
publishDate |
2017 |
url |
https://doi.org/10.18739/A2RV0D15F |
op_coverage |
Seward Penisula, AK Baffin Island, Canada ENVELOPE(-166.1317,-164.8642,65.4094,64.8972) BEGINDATE: 2011-07-01T00:00:00Z ENDDATE: 2015-08-01T00:00:00Z |
long_lat |
ENVELOPE(-166.1317,-164.8642,65.4094,64.8972) |
geographic |
Arctic Baffin Island Canada |
geographic_facet |
Arctic Baffin Island Canada |
genre |
Arctic Baffin Island Baffin Seward Peninsula Subarctic Zooplankton |
genre_facet |
Arctic Baffin Island Baffin Seward Peninsula Subarctic Zooplankton |
op_doi |
https://doi.org/10.18739/A2RV0D15F |
_version_ |
1800869506214526976 |