Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California
These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores r...
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USGS Science Data Catalog
2017
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dataone:b93faa49-ec9a-410d-ab35-e05026a22b57 2024-06-03T18:46:47+00:00 Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California Richmond, J.Q. Backlin, A.R. Galst-Cavalcante, Carey O’Brien, J.W. Fisher, R.N. Santa Ana, San Gabriel, Los Angeles, and Santa Clara River watersheds in southern California. ENVELOPE(-119.108604,-117.39451,34.5274,33.969) BEGINDATE: 2012-01-01T00:00:00Z ENDDATE: 2015-01-01T00:00:00Z 2017-01-01T00:00:00Z https://search.dataone.org/view/b93faa49-ec9a-410d-ab35-e05026a22b57 unknown USGS Science Data Catalog endangered species genetics fish metapopulation admixture dendritic network hybridization Santa Ana San Gabriel Los Angeles Santa Clara River watersheds southern California Catostomus Catostomus Catostomus santaanae Catostomus fumeiventris Dataset 2017 dataone:urn:node:USGS_SDC 2024-06-03T18:10:54Z These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores representing the two allele copies detected. Included are five tables: Full dataset (includes genotypes from all samples), Santa Clara River samples only (includes genotypes only from samples collected in the Santa Clara River), Convert File format key (explains the data file format), Population identifiers (translates the numerical population identifiers to actual collecting sites), CASA sampling points (one coordinate given for each general collection site). Whole specimens are accessioned at the Los Angeles County Museum of Natural History (catalog numbers 58475-58481). GenBank accession numbers for the DNA sequences are: MF918422 - MF918481. These data support the following publication: Richmond, J.Q., Backlin, A.R., Galst‐Cavalcante, C., O'Brien, J.W. and Fisher, R.N., Loss of dendritic connectivity in southern California's urban riverscape facilitates decline of an endemic freshwater fish. Molecular Ecology. Dataset Catostomus catostomus USGS Science Data Catalog (via DataONE) ENVELOPE(-119.108604,-117.39451,34.5274,33.969) |
institution |
Open Polar |
collection |
USGS Science Data Catalog (via DataONE) |
op_collection_id |
dataone:urn:node:USGS_SDC |
language |
unknown |
topic |
endangered species genetics fish metapopulation admixture dendritic network hybridization Santa Ana San Gabriel Los Angeles Santa Clara River watersheds southern California Catostomus Catostomus Catostomus santaanae Catostomus fumeiventris |
spellingShingle |
endangered species genetics fish metapopulation admixture dendritic network hybridization Santa Ana San Gabriel Los Angeles Santa Clara River watersheds southern California Catostomus Catostomus Catostomus santaanae Catostomus fumeiventris Richmond, J.Q. Backlin, A.R. Galst-Cavalcante, Carey O’Brien, J.W. Fisher, R.N. Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California |
topic_facet |
endangered species genetics fish metapopulation admixture dendritic network hybridization Santa Ana San Gabriel Los Angeles Santa Clara River watersheds southern California Catostomus Catostomus Catostomus santaanae Catostomus fumeiventris |
description |
These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores representing the two allele copies detected. Included are five tables: Full dataset (includes genotypes from all samples), Santa Clara River samples only (includes genotypes only from samples collected in the Santa Clara River), Convert File format key (explains the data file format), Population identifiers (translates the numerical population identifiers to actual collecting sites), CASA sampling points (one coordinate given for each general collection site). Whole specimens are accessioned at the Los Angeles County Museum of Natural History (catalog numbers 58475-58481). GenBank accession numbers for the DNA sequences are: MF918422 - MF918481. These data support the following publication: Richmond, J.Q., Backlin, A.R., Galst‐Cavalcante, C., O'Brien, J.W. and Fisher, R.N., Loss of dendritic connectivity in southern California's urban riverscape facilitates decline of an endemic freshwater fish. Molecular Ecology. |
format |
Dataset |
author |
Richmond, J.Q. Backlin, A.R. Galst-Cavalcante, Carey O’Brien, J.W. Fisher, R.N. |
author_facet |
Richmond, J.Q. Backlin, A.R. Galst-Cavalcante, Carey O’Brien, J.W. Fisher, R.N. |
author_sort |
Richmond, J.Q. |
title |
Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California |
title_short |
Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California |
title_full |
Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California |
title_fullStr |
Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California |
title_full_unstemmed |
Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California |
title_sort |
microsatellite genotype scores for a contemporary, range-wide sample of santa ana sucker in southern california |
publisher |
USGS Science Data Catalog |
publishDate |
2017 |
url |
https://search.dataone.org/view/b93faa49-ec9a-410d-ab35-e05026a22b57 |
op_coverage |
Santa Ana, San Gabriel, Los Angeles, and Santa Clara River watersheds in southern California. ENVELOPE(-119.108604,-117.39451,34.5274,33.969) BEGINDATE: 2012-01-01T00:00:00Z ENDDATE: 2015-01-01T00:00:00Z |
long_lat |
ENVELOPE(-119.108604,-117.39451,34.5274,33.969) |
genre |
Catostomus catostomus |
genre_facet |
Catostomus catostomus |
_version_ |
1800871193055592448 |