Dose-response RNA sequencing on red drum larvae after slick and source oil exposure

Total mRNA and miRNA profiles of 48 hpf red drum larvae after slick (1.25%, 2.5%, 5%) and source oil (0.135%, 0.27%, 0.54%) exposure were generated by deep sequencing, in triplicate, using Illumina NextSEQ. All mRNA reads were pooled and assembled de novo using Trinity. Known and novel miRNAs were i...

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Bibliographic Details
Format: Dataset
Language:unknown
Published: Gulf of Mexico Research Initiative 2018
Subjects:
red drum
rna sequencing
mirna
mrna
dose response
Sciaenops occelatus
Red drum
Online Access:https://search.dataone.org/view/R4-x258-000-0034-0001
id dataone:R4-x258-000-0034-0001
record_format openpolar
spelling dataone:R4-x258-000-0034-0001 2023-12-03T20:44:02+01:00 Dose-response RNA sequencing on red drum larvae after slick and source oil exposure 2018-10-03T00:00:00Z https://search.dataone.org/view/R4-x258-000-0034-0001 unknown Gulf of Mexico Research Initiative red drum rna sequencing mirna mrna dose response Sciaenops occelatus Dataset 2018 dataone:urn:node:GRIIDC 2023-12-03T20:12:48Z Total mRNA and miRNA profiles of 48 hpf red drum larvae after slick (1.25%, 2.5%, 5%) and source oil (0.135%, 0.27%, 0.54%) exposure were generated by deep sequencing, in triplicate, using Illumina NextSEQ. All mRNA reads were pooled and assembled de novo using Trinity. Known and novel miRNAs were identified using miRDeep2. Statistical bioinformatic analysis was further conducted by DAVID and Ingenuity Pathway Analysis to reveal dose-response biological effects of oil exposure. Dataset Red drum Gulf of Mexico Research Initiative (via DataONE)
institution Open Polar
collection Gulf of Mexico Research Initiative (via DataONE)
op_collection_id dataone:urn:node:GRIIDC
language unknown
topic red drum
rna sequencing
mirna
mrna
dose response
Sciaenops occelatus
spellingShingle red drum
rna sequencing
mirna
mrna
dose response
Sciaenops occelatus
Dose-response RNA sequencing on red drum larvae after slick and source oil exposure
topic_facet red drum
rna sequencing
mirna
mrna
dose response
Sciaenops occelatus
description Total mRNA and miRNA profiles of 48 hpf red drum larvae after slick (1.25%, 2.5%, 5%) and source oil (0.135%, 0.27%, 0.54%) exposure were generated by deep sequencing, in triplicate, using Illumina NextSEQ. All mRNA reads were pooled and assembled de novo using Trinity. Known and novel miRNAs were identified using miRDeep2. Statistical bioinformatic analysis was further conducted by DAVID and Ingenuity Pathway Analysis to reveal dose-response biological effects of oil exposure.
format Dataset
title Dose-response RNA sequencing on red drum larvae after slick and source oil exposure
title_short Dose-response RNA sequencing on red drum larvae after slick and source oil exposure
title_full Dose-response RNA sequencing on red drum larvae after slick and source oil exposure
title_fullStr Dose-response RNA sequencing on red drum larvae after slick and source oil exposure
title_full_unstemmed Dose-response RNA sequencing on red drum larvae after slick and source oil exposure
title_sort dose-response rna sequencing on red drum larvae after slick and source oil exposure
publisher Gulf of Mexico Research Initiative
publishDate 2018
url https://search.dataone.org/view/R4-x258-000-0034-0001
genre Red drum
genre_facet Red drum
_version_ 1784300548409786368

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