Using spatiotemporal statistical models to estimate animal abundance and infer ecological dynamics from survey counts

• Published in: Ecological Monographs
• Main Authors: Conn, Paul B., Johnson, Devin S., Hoef, Jay M. Ver, Hooten, Mevin B., London, Joshua M., Boveng, Peter L.
• Format: Article in Journal/Newspaper
• Language: English
• Published: Wiley 2015
• Subjects: Bering Sea; Sea ice
• Online Access: http://dx.doi.org/10.1890/14-0959.1; https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1890%2F14-0959.1; https://esajournals.onlinelibrary.wiley.com/doi/pdf/10.1890/14-0959.1

Ecologists often fit models to survey data to estimate and explain variation in animal abundance. Such models typically require that animal density remains constant across the landscape where sampling is being conducted, a potentially problematic assumption for animals inhabiting dynamic landscapes or otherwise exhibiting considerable spatiotemporal variation in density. We review several concepts from the burgeoning literature on spatiotemporal statistical models, including the nature of the temporal structure (i.e., descriptive or dynamical) and strategies for dimension reduction to promote computational tractability. We also review several features as they specifically relate to abundance estimation, including boundary conditions, population closure, choice of link function, and extrapolation of predicted relationships to unsampled areas. We then compare a suite of novel and existing spatiotemporal hierarchical models for animal count data that permit animal density to vary over space and time, including formulations motivated by resource selection and allowing for closed populations. We gauge the relative performance (bias, precision, computational demands) of alternative spatiotemporal models when confronted with simulated and real data sets from dynamic animal populations. For the latter, we analyze spotted seal ( Phoca largha ) counts from an aerial survey of the Bering Sea where the quantity and quality of suitable habitat (sea ice) changed dramatically while surveys were being conducted. Simulation analyses suggested that multiple types of spatiotemporal models provide reasonable inference (low positive bias, high precision) about animal abundance, but have potential for overestimating precision. Analysis of spotted seal data indicated that several model formulations, including those based on a log‐Gaussian Cox process, had a tendency to overestimate abundance. By contrast, a model that included a population closure assumption and a scale prior on total abundance produced estimates that largely ...