gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records
Abstract To improve understanding of population structure, ecosystem relationships and predictive models of human impact in cetaceans and other marine megafauna, we developed gene GIS , a suite of GIS tools and a customized A rc M arine data model to facilitate visual exploration and spatial analyse...
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crwiley:10.1111/tgis.12090 2023-12-03T10:25:45+01:00 gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records Dick, Dorothy M. Walbridge, Shaun Wright, Dawn J. Calambokidis, John Falcone, Erin A. Steel, Debbie Follett, Tomas Holmberg, Jason Baker, C. Scott Office of Naval Research 2014 http://dx.doi.org/10.1111/tgis.12090 https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Ftgis.12090 https://onlinelibrary.wiley.com/doi/pdf/10.1111/tgis.12090 en eng Wiley http://onlinelibrary.wiley.com/termsAndConditions#vor Transactions in GIS volume 18, issue 3, page 324-350 ISSN 1361-1682 1467-9671 General Earth and Planetary Sciences journal-article 2014 crwiley https://doi.org/10.1111/tgis.12090 2023-11-09T13:59:14Z Abstract To improve understanding of population structure, ecosystem relationships and predictive models of human impact in cetaceans and other marine megafauna, we developed gene GIS , a suite of GIS tools and a customized A rc M arine data model to facilitate visual exploration and spatial analyses of individual‐based records from DNA profiles and photo‐identification records. We used the open source programming language P ython 2.7 and A rc GIS 10.1 software to create a user‐friendly, menu‐driven toolbar linked to a P ython T oolbox containing customized geoprocessing scripts. For ease of sharing and installation, we compiled the gene GIS program into an A rc GIS P ython A dd‐ I n, freely available for download from the website http://genegis.org . We used the L ord‐ C astillo et al. (2009) A rc M arine data model customization as the starting point for our work and retained nine key base A rc M arine classes. We demonstrate the utility of gene GIS using an integrated database of more than 18,000 records of humpback whales ( Megaptera novaeangliae ) in the N orth P acific collected during the S tructure of P opulations, L evels of A bundance and S tatus of H umpback W hales in the N orth P acific ( SPLASH ) program. These records represent more than 8,000 naturally marked individuals and 2,700 associated DNA profiles, including 10 biparentally inherited microsatellite loci, maternally inherited mitochondrial DNA , and genetic sex. Article in Journal/Newspaper Megaptera novaeangliae Wiley Online Library (via Crossref) Transactions in GIS 18 3 324 350 |
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Wiley Online Library (via Crossref) |
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language |
English |
topic |
General Earth and Planetary Sciences |
spellingShingle |
General Earth and Planetary Sciences Dick, Dorothy M. Walbridge, Shaun Wright, Dawn J. Calambokidis, John Falcone, Erin A. Steel, Debbie Follett, Tomas Holmberg, Jason Baker, C. Scott gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records |
topic_facet |
General Earth and Planetary Sciences |
description |
Abstract To improve understanding of population structure, ecosystem relationships and predictive models of human impact in cetaceans and other marine megafauna, we developed gene GIS , a suite of GIS tools and a customized A rc M arine data model to facilitate visual exploration and spatial analyses of individual‐based records from DNA profiles and photo‐identification records. We used the open source programming language P ython 2.7 and A rc GIS 10.1 software to create a user‐friendly, menu‐driven toolbar linked to a P ython T oolbox containing customized geoprocessing scripts. For ease of sharing and installation, we compiled the gene GIS program into an A rc GIS P ython A dd‐ I n, freely available for download from the website http://genegis.org . We used the L ord‐ C astillo et al. (2009) A rc M arine data model customization as the starting point for our work and retained nine key base A rc M arine classes. We demonstrate the utility of gene GIS using an integrated database of more than 18,000 records of humpback whales ( Megaptera novaeangliae ) in the N orth P acific collected during the S tructure of P opulations, L evels of A bundance and S tatus of H umpback W hales in the N orth P acific ( SPLASH ) program. These records represent more than 8,000 naturally marked individuals and 2,700 associated DNA profiles, including 10 biparentally inherited microsatellite loci, maternally inherited mitochondrial DNA , and genetic sex. |
author2 |
Office of Naval Research |
format |
Article in Journal/Newspaper |
author |
Dick, Dorothy M. Walbridge, Shaun Wright, Dawn J. Calambokidis, John Falcone, Erin A. Steel, Debbie Follett, Tomas Holmberg, Jason Baker, C. Scott |
author_facet |
Dick, Dorothy M. Walbridge, Shaun Wright, Dawn J. Calambokidis, John Falcone, Erin A. Steel, Debbie Follett, Tomas Holmberg, Jason Baker, C. Scott |
author_sort |
Dick, Dorothy M. |
title |
gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records |
title_short |
gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records |
title_full |
gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records |
title_fullStr |
gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records |
title_full_unstemmed |
gene<scp>GIS</scp> : Geoanalytical Tools and Arc Marine Customization for Individual‐Based Genetic Records |
title_sort |
gene<scp>gis</scp> : geoanalytical tools and arc marine customization for individual‐based genetic records |
publisher |
Wiley |
publishDate |
2014 |
url |
http://dx.doi.org/10.1111/tgis.12090 https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Ftgis.12090 https://onlinelibrary.wiley.com/doi/pdf/10.1111/tgis.12090 |
genre |
Megaptera novaeangliae |
genre_facet |
Megaptera novaeangliae |
op_source |
Transactions in GIS volume 18, issue 3, page 324-350 ISSN 1361-1682 1467-9671 |
op_rights |
http://onlinelibrary.wiley.com/termsAndConditions#vor |
op_doi |
https://doi.org/10.1111/tgis.12090 |
container_title |
Transactions in GIS |
container_volume |
18 |
container_issue |
3 |
container_start_page |
324 |
op_container_end_page |
350 |
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1784274773644148736 |