Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer

Abstract To improve the transition state (TS) search capability in complex chemical environments, AMK_Mountain is constructed based on the automated reaction mechanisms and kinetics (AutoMeKin) package. AMK_Mountain does not distinguish the reaction type of the TSs, which is beneficial to obtaining...

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Published in:Journal of Computational Chemistry
Main Authors: Zhang, Guan, Li, Jin, Liang, Xinxin, Liu, Zongkuan
Format: Article in Journal/Newspaper
Language:English
Published: Wiley 2022
Subjects:
Online Access:http://dx.doi.org/10.1002/jcc.26891
https://onlinelibrary.wiley.com/doi/pdf/10.1002/jcc.26891
https://onlinelibrary.wiley.com/doi/full-xml/10.1002/jcc.26891
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spelling crwiley:10.1002/jcc.26891 2024-09-15T18:28:56+00:00 Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer Zhang, Guan Li, Jin Liang, Xinxin Liu, Zongkuan 2022 http://dx.doi.org/10.1002/jcc.26891 https://onlinelibrary.wiley.com/doi/pdf/10.1002/jcc.26891 https://onlinelibrary.wiley.com/doi/full-xml/10.1002/jcc.26891 en eng Wiley http://onlinelibrary.wiley.com/termsAndConditions#vor Journal of Computational Chemistry volume 43, issue 22, page 1513-1523 ISSN 0192-8651 1096-987X journal-article 2022 crwiley https://doi.org/10.1002/jcc.26891 2024-08-13T04:15:40Z Abstract To improve the transition state (TS) search capability in complex chemical environments, AMK_Mountain is constructed based on the automated reaction mechanisms and kinetics (AutoMeKin) package. AMK_Mountain does not distinguish the reaction type of the TSs, which is beneficial to obtaining a more comprehensive reaction mechanism. In this study, the first step of the alkaline hydrolysis process of nitrocellulose monomer was adopted as the research object, and 730 possible initial configurations are constructed and 22 TSs pass high‐level calculations. Energy difference and interaction region indicator reveal that the first step of alkaline hydrolysis is mainly the combination of nitrogen‐containing functional groups at the positions α and β with hydroxide anions, followed by the formation of nitric acid and the further loss of protons to form nitrate. Overall, in combination with GFN 2 ‐xTB and ORCA, the AMK_Mountain technique provides a reliable method for the location of the TSs in complex environments. Article in Journal/Newspaper Orca Wiley Online Library Journal of Computational Chemistry 43 22 1513 1523
institution Open Polar
collection Wiley Online Library
op_collection_id crwiley
language English
description Abstract To improve the transition state (TS) search capability in complex chemical environments, AMK_Mountain is constructed based on the automated reaction mechanisms and kinetics (AutoMeKin) package. AMK_Mountain does not distinguish the reaction type of the TSs, which is beneficial to obtaining a more comprehensive reaction mechanism. In this study, the first step of the alkaline hydrolysis process of nitrocellulose monomer was adopted as the research object, and 730 possible initial configurations are constructed and 22 TSs pass high‐level calculations. Energy difference and interaction region indicator reveal that the first step of alkaline hydrolysis is mainly the combination of nitrogen‐containing functional groups at the positions α and β with hydroxide anions, followed by the formation of nitric acid and the further loss of protons to form nitrate. Overall, in combination with GFN 2 ‐xTB and ORCA, the AMK_Mountain technique provides a reliable method for the location of the TSs in complex environments.
format Article in Journal/Newspaper
author Zhang, Guan
Li, Jin
Liang, Xinxin
Liu, Zongkuan
spellingShingle Zhang, Guan
Li, Jin
Liang, Xinxin
Liu, Zongkuan
Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer
author_facet Zhang, Guan
Li, Jin
Liang, Xinxin
Liu, Zongkuan
author_sort Zhang, Guan
title Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer
title_short Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer
title_full Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer
title_fullStr Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer
title_full_unstemmed Automated reaction mechanisms and kinetics with the nudged elastic band method‐based AMK_Mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer
title_sort automated reaction mechanisms and kinetics with the nudged elastic band method‐based amk_mountain and its description of the preliminary alkaline hydrolysis of nitrocellulose monomer
publisher Wiley
publishDate 2022
url http://dx.doi.org/10.1002/jcc.26891
https://onlinelibrary.wiley.com/doi/pdf/10.1002/jcc.26891
https://onlinelibrary.wiley.com/doi/full-xml/10.1002/jcc.26891
genre Orca
genre_facet Orca
op_source Journal of Computational Chemistry
volume 43, issue 22, page 1513-1523
ISSN 0192-8651 1096-987X
op_rights http://onlinelibrary.wiley.com/termsAndConditions#vor
op_doi https://doi.org/10.1002/jcc.26891
container_title Journal of Computational Chemistry
container_volume 43
container_issue 22
container_start_page 1513
op_container_end_page 1523
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