Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores

Abstract Ice-associated microalgae make a significant seasonal contribution to primary production and biogeochemical cycling in polar regions. However, the distribution of algal cells is driven by strong physicochemical gradients which lead to a degree of microspatial variability in the microbial bi...

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Published in:Scientific Reports
Main Authors: Cimoli, Emiliano, Lucieer, Vanessa, Meiners, Klaus M., Chennu, Arjun, Castrisios, Katerina, Ryan, Ken G., Lund-Hansen, Lars Chresten, Martin, Andrew, Kennedy, Fraser, Lucieer, Arko
Other Authors: Australian Research Council, New Zealand Antarctic Research Institute
Format: Article in Journal/Newspaper
Language:English
Published: Springer Science and Business Media LLC 2020
Subjects:
Online Access:http://dx.doi.org/10.1038/s41598-020-79084-6
http://www.nature.com/articles/s41598-020-79084-6.pdf
http://www.nature.com/articles/s41598-020-79084-6
id crspringernat:10.1038/s41598-020-79084-6
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spelling crspringernat:10.1038/s41598-020-79084-6 2023-05-15T18:17:32+02:00 Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores Cimoli, Emiliano Lucieer, Vanessa Meiners, Klaus M. Chennu, Arjun Castrisios, Katerina Ryan, Ken G. Lund-Hansen, Lars Chresten Martin, Andrew Kennedy, Fraser Lucieer, Arko Australian Research Council New Zealand Antarctic Research Institute 2020 http://dx.doi.org/10.1038/s41598-020-79084-6 http://www.nature.com/articles/s41598-020-79084-6.pdf http://www.nature.com/articles/s41598-020-79084-6 en eng Springer Science and Business Media LLC https://creativecommons.org/licenses/by/4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Scientific Reports volume 10, issue 1 ISSN 2045-2322 Multidisciplinary journal-article 2020 crspringernat https://doi.org/10.1038/s41598-020-79084-6 2022-01-04T12:32:24Z Abstract Ice-associated microalgae make a significant seasonal contribution to primary production and biogeochemical cycling in polar regions. However, the distribution of algal cells is driven by strong physicochemical gradients which lead to a degree of microspatial variability in the microbial biomass that is significant, but difficult to quantify. We address this methodological gap by employing a field-deployable hyperspectral scanning and photogrammetric approach to study sea-ice cores. The optical set-up facilitated unsupervised mapping of the vertical and horizontal distribution of phototrophic biomass in sea-ice cores at mm-scale resolution (using chlorophyll a [Chl a ] as proxy), and enabled the development of novel spectral indices to be tested against extracted Chl a (R 2 ≤ 0.84). The modelled bio-optical relationships were applied to hyperspectral imagery captured both in situ (using an under-ice sliding platform) and ex situ (on the extracted cores) to quantitatively map Chl a in mg m −2 at high-resolution (≤ 2.4 mm). The optical quantification of Chl a on a per-pixel basis represents a step-change in characterising microspatial variation in the distribution of ice-associated algae. This study highlights the need to increase the resolution at which we monitor under-ice biophysical systems, and the emerging capability of hyperspectral imaging technologies to deliver on this research goal. Article in Journal/Newspaper Sea ice Springer Nature (via Crossref) Scientific Reports 10 1
institution Open Polar
collection Springer Nature (via Crossref)
op_collection_id crspringernat
language English
topic Multidisciplinary
spellingShingle Multidisciplinary
Cimoli, Emiliano
Lucieer, Vanessa
Meiners, Klaus M.
Chennu, Arjun
Castrisios, Katerina
Ryan, Ken G.
Lund-Hansen, Lars Chresten
Martin, Andrew
Kennedy, Fraser
Lucieer, Arko
Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores
topic_facet Multidisciplinary
description Abstract Ice-associated microalgae make a significant seasonal contribution to primary production and biogeochemical cycling in polar regions. However, the distribution of algal cells is driven by strong physicochemical gradients which lead to a degree of microspatial variability in the microbial biomass that is significant, but difficult to quantify. We address this methodological gap by employing a field-deployable hyperspectral scanning and photogrammetric approach to study sea-ice cores. The optical set-up facilitated unsupervised mapping of the vertical and horizontal distribution of phototrophic biomass in sea-ice cores at mm-scale resolution (using chlorophyll a [Chl a ] as proxy), and enabled the development of novel spectral indices to be tested against extracted Chl a (R 2 ≤ 0.84). The modelled bio-optical relationships were applied to hyperspectral imagery captured both in situ (using an under-ice sliding platform) and ex situ (on the extracted cores) to quantitatively map Chl a in mg m −2 at high-resolution (≤ 2.4 mm). The optical quantification of Chl a on a per-pixel basis represents a step-change in characterising microspatial variation in the distribution of ice-associated algae. This study highlights the need to increase the resolution at which we monitor under-ice biophysical systems, and the emerging capability of hyperspectral imaging technologies to deliver on this research goal.
author2 Australian Research Council
New Zealand Antarctic Research Institute
format Article in Journal/Newspaper
author Cimoli, Emiliano
Lucieer, Vanessa
Meiners, Klaus M.
Chennu, Arjun
Castrisios, Katerina
Ryan, Ken G.
Lund-Hansen, Lars Chresten
Martin, Andrew
Kennedy, Fraser
Lucieer, Arko
author_facet Cimoli, Emiliano
Lucieer, Vanessa
Meiners, Klaus M.
Chennu, Arjun
Castrisios, Katerina
Ryan, Ken G.
Lund-Hansen, Lars Chresten
Martin, Andrew
Kennedy, Fraser
Lucieer, Arko
author_sort Cimoli, Emiliano
title Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores
title_short Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores
title_full Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores
title_fullStr Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores
title_full_unstemmed Mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores
title_sort mapping the in situ microspatial distribution of ice algal biomass through hyperspectral imaging of sea-ice cores
publisher Springer Science and Business Media LLC
publishDate 2020
url http://dx.doi.org/10.1038/s41598-020-79084-6
http://www.nature.com/articles/s41598-020-79084-6.pdf
http://www.nature.com/articles/s41598-020-79084-6
genre Sea ice
genre_facet Sea ice
op_source Scientific Reports
volume 10, issue 1
ISSN 2045-2322
op_rights https://creativecommons.org/licenses/by/4.0
https://creativecommons.org/licenses/by/4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1038/s41598-020-79084-6
container_title Scientific Reports
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