Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia
Abstract The genus Kordia is one of many genera affiliated with the family Flavobacteriaceae of the phylum Bacteroidetes , well known for its degradation of high molecular weight organic matters. The genus Kordia currently comprises eight species, type strains of which have been isolated from a dive...
Published in: | Scientific Reports |
---|---|
Main Authors: | , , |
Other Authors: | , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
Springer Science and Business Media LLC
2020
|
Subjects: | |
Online Access: | http://dx.doi.org/10.1038/s41598-020-71328-9 https://www.nature.com/articles/s41598-020-71328-9.pdf https://www.nature.com/articles/s41598-020-71328-9 |
id |
crspringernat:10.1038/s41598-020-71328-9 |
---|---|
record_format |
openpolar |
spelling |
crspringernat:10.1038/s41598-020-71328-9 2023-05-15T14:10:46+02:00 Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia Lim, Yeonjung Kang, Ilnam Cho, Jang-Cheon National Research Foundation of Korea Korea Institute of Marine Science and Technology promotion 2020 http://dx.doi.org/10.1038/s41598-020-71328-9 https://www.nature.com/articles/s41598-020-71328-9.pdf https://www.nature.com/articles/s41598-020-71328-9 en eng Springer Science and Business Media LLC https://creativecommons.org/licenses/by/4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Scientific Reports volume 10, issue 1 ISSN 2045-2322 Multidisciplinary journal-article 2020 crspringernat https://doi.org/10.1038/s41598-020-71328-9 2022-01-04T10:46:31Z Abstract The genus Kordia is one of many genera affiliated with the family Flavobacteriaceae of the phylum Bacteroidetes , well known for its degradation of high molecular weight organic matters. The genus Kordia currently comprises eight species, type strains of which have been isolated from a diverse range of marine environments. As of this report, four genome sequences have been submitted for cultured strains of Kordia , but none are complete nor have they been analyzed comprehensively. In this study, we report the complete genome of Kordia antarctica IMCC3317 T , isolated from coastal seawater off the Antarctic Peninsula. The complete genome of IMCC3317 T consists of a single circular chromosome with 5.5 Mbp and a 33.2 mol% of G+C DNA content. The IMCC3317 T genome showed features typical of chemoheterotrophic marine bacteria and similar to other Kordia genomes, such as complete gene sets for the Embden–Meyerhof–Parnas glycolysis pathway, tricarboxylic acid cycle and oxidative phosphorylation. The genome also encoded many carbohydrate-active enzymes, some of which were clustered into approximately seven polysaccharide utilization loci, thereby demonstrating the potential for polysaccharide utilization. Finally, a nosZ gene encoding nitrous oxide reductase, an enzyme that catalyzes the reduction of N 2 O to N 2 gas, was also unique to the IMCC3317 T genome. Article in Journal/Newspaper Antarc* Antarctic Antarctic Peninsula Antarctica Springer Nature (via Crossref) Antarctic Antarctic Peninsula The Antarctic Scientific Reports 10 1 |
institution |
Open Polar |
collection |
Springer Nature (via Crossref) |
op_collection_id |
crspringernat |
language |
English |
topic |
Multidisciplinary |
spellingShingle |
Multidisciplinary Lim, Yeonjung Kang, Ilnam Cho, Jang-Cheon Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia |
topic_facet |
Multidisciplinary |
description |
Abstract The genus Kordia is one of many genera affiliated with the family Flavobacteriaceae of the phylum Bacteroidetes , well known for its degradation of high molecular weight organic matters. The genus Kordia currently comprises eight species, type strains of which have been isolated from a diverse range of marine environments. As of this report, four genome sequences have been submitted for cultured strains of Kordia , but none are complete nor have they been analyzed comprehensively. In this study, we report the complete genome of Kordia antarctica IMCC3317 T , isolated from coastal seawater off the Antarctic Peninsula. The complete genome of IMCC3317 T consists of a single circular chromosome with 5.5 Mbp and a 33.2 mol% of G+C DNA content. The IMCC3317 T genome showed features typical of chemoheterotrophic marine bacteria and similar to other Kordia genomes, such as complete gene sets for the Embden–Meyerhof–Parnas glycolysis pathway, tricarboxylic acid cycle and oxidative phosphorylation. The genome also encoded many carbohydrate-active enzymes, some of which were clustered into approximately seven polysaccharide utilization loci, thereby demonstrating the potential for polysaccharide utilization. Finally, a nosZ gene encoding nitrous oxide reductase, an enzyme that catalyzes the reduction of N 2 O to N 2 gas, was also unique to the IMCC3317 T genome. |
author2 |
National Research Foundation of Korea Korea Institute of Marine Science and Technology promotion |
format |
Article in Journal/Newspaper |
author |
Lim, Yeonjung Kang, Ilnam Cho, Jang-Cheon |
author_facet |
Lim, Yeonjung Kang, Ilnam Cho, Jang-Cheon |
author_sort |
Lim, Yeonjung |
title |
Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia |
title_short |
Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia |
title_full |
Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia |
title_fullStr |
Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia |
title_full_unstemmed |
Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia |
title_sort |
genome characteristics of kordia antarctica imcc3317t and comparative genome analysis of the genus kordia |
publisher |
Springer Science and Business Media LLC |
publishDate |
2020 |
url |
http://dx.doi.org/10.1038/s41598-020-71328-9 https://www.nature.com/articles/s41598-020-71328-9.pdf https://www.nature.com/articles/s41598-020-71328-9 |
geographic |
Antarctic Antarctic Peninsula The Antarctic |
geographic_facet |
Antarctic Antarctic Peninsula The Antarctic |
genre |
Antarc* Antarctic Antarctic Peninsula Antarctica |
genre_facet |
Antarc* Antarctic Antarctic Peninsula Antarctica |
op_source |
Scientific Reports volume 10, issue 1 ISSN 2045-2322 |
op_rights |
https://creativecommons.org/licenses/by/4.0 https://creativecommons.org/licenses/by/4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1038/s41598-020-71328-9 |
container_title |
Scientific Reports |
container_volume |
10 |
container_issue |
1 |
_version_ |
1766282855035437056 |