Toward a global reference database of COI barcodes for marine zooplankton
Abstract Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with a...
Published in: | Marine Biology |
---|---|
Main Authors: | , , , , , , , , , , , , , , , , |
Other Authors: | |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
Springer Science and Business Media LLC
2021
|
Subjects: | |
Online Access: | http://dx.doi.org/10.1007/s00227-021-03887-y https://link.springer.com/content/pdf/10.1007/s00227-021-03887-y.pdf https://link.springer.com/article/10.1007/s00227-021-03887-y/fulltext.html |
id |
crspringernat:10.1007/s00227-021-03887-y |
---|---|
record_format |
openpolar |
spelling |
crspringernat:10.1007/s00227-021-03887-y 2023-05-15T15:10:19+02:00 Toward a global reference database of COI barcodes for marine zooplankton Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd D. Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russell R. Hosia, Aino Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata National Science Foundation 2021 http://dx.doi.org/10.1007/s00227-021-03887-y https://link.springer.com/content/pdf/10.1007/s00227-021-03887-y.pdf https://link.springer.com/article/10.1007/s00227-021-03887-y/fulltext.html en eng Springer Science and Business Media LLC https://creativecommons.org/licenses/by/4.0 https://creativecommons.org/licenses/by/4.0 CC-BY Marine Biology volume 168, issue 6 ISSN 0025-3162 1432-1793 Ecology Aquatic Science Ecology, Evolution, Behavior and Systematics journal-article 2021 crspringernat https://doi.org/10.1007/s00227-021-03887-y 2022-01-04T07:32:11Z Abstract Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change. Article in Journal/Newspaper Arctic Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton Springer Nature (via Crossref) Arctic Holo ENVELOPE(9.954,9.954,63.343,63.343) Pacific Marine Biology 168 6 |
institution |
Open Polar |
collection |
Springer Nature (via Crossref) |
op_collection_id |
crspringernat |
language |
English |
topic |
Ecology Aquatic Science Ecology, Evolution, Behavior and Systematics |
spellingShingle |
Ecology Aquatic Science Ecology, Evolution, Behavior and Systematics Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd D. Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russell R. Hosia, Aino Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata Toward a global reference database of COI barcodes for marine zooplankton |
topic_facet |
Ecology Aquatic Science Ecology, Evolution, Behavior and Systematics |
description |
Abstract Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change. |
author2 |
National Science Foundation |
format |
Article in Journal/Newspaper |
author |
Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd D. Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russell R. Hosia, Aino Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata |
author_facet |
Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd D. Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russell R. Hosia, Aino Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata |
author_sort |
Bucklin, Ann |
title |
Toward a global reference database of COI barcodes for marine zooplankton |
title_short |
Toward a global reference database of COI barcodes for marine zooplankton |
title_full |
Toward a global reference database of COI barcodes for marine zooplankton |
title_fullStr |
Toward a global reference database of COI barcodes for marine zooplankton |
title_full_unstemmed |
Toward a global reference database of COI barcodes for marine zooplankton |
title_sort |
toward a global reference database of coi barcodes for marine zooplankton |
publisher |
Springer Science and Business Media LLC |
publishDate |
2021 |
url |
http://dx.doi.org/10.1007/s00227-021-03887-y https://link.springer.com/content/pdf/10.1007/s00227-021-03887-y.pdf https://link.springer.com/article/10.1007/s00227-021-03887-y/fulltext.html |
long_lat |
ENVELOPE(9.954,9.954,63.343,63.343) |
geographic |
Arctic Holo Pacific |
geographic_facet |
Arctic Holo Pacific |
genre |
Arctic Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton |
genre_facet |
Arctic Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton |
op_source |
Marine Biology volume 168, issue 6 ISSN 0025-3162 1432-1793 |
op_rights |
https://creativecommons.org/licenses/by/4.0 https://creativecommons.org/licenses/by/4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1007/s00227-021-03887-y |
container_title |
Marine Biology |
container_volume |
168 |
container_issue |
6 |
_version_ |
1766341351822065664 |