Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies

Fourier-transform near infrared (FT-NIR) spectroscopy of ovarian tissue was used to predict maturity status of fish species with variable reproductive strategies collected at limited time periods of their spawning cycle. Reference data were derived from histologically prepared tissue samples from fo...

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Published in:Journal of Near Infrared Spectroscopy
Main Authors: TenBrink, Todd, Neidetcher, Sandra, Arrington, Morgan, Benson, Irina, Conrath, Christina, Helser, Thomas
Other Authors: National Oceanic and Atmospheric Administration
Format: Article in Journal/Newspaper
Language:English
Published: SAGE Publications 2022
Subjects:
Online Access:http://dx.doi.org/10.1177/09670335221097005
http://journals.sagepub.com/doi/pdf/10.1177/09670335221097005
http://journals.sagepub.com/doi/full-xml/10.1177/09670335221097005
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spelling crsagepubl:10.1177/09670335221097005 2024-04-07T07:52:50+00:00 Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies TenBrink, Todd Neidetcher, Sandra Arrington, Morgan Benson, Irina Conrath, Christina Helser, Thomas National Oceanic and Atmospheric Administration 2022 http://dx.doi.org/10.1177/09670335221097005 http://journals.sagepub.com/doi/pdf/10.1177/09670335221097005 http://journals.sagepub.com/doi/full-xml/10.1177/09670335221097005 en eng SAGE Publications http://journals.sagepub.com/page/policies/text-and-data-mining-license Journal of Near Infrared Spectroscopy volume 30, issue 4, page 179-188 ISSN 0967-0335 1751-6552 Spectroscopy journal-article 2022 crsagepubl https://doi.org/10.1177/09670335221097005 2024-03-08T03:20:21Z Fourier-transform near infrared (FT-NIR) spectroscopy of ovarian tissue was used to predict maturity status of fish species with variable reproductive strategies collected at limited time periods of their spawning cycle. Reference data were derived from histologically prepared tissue samples from four species: Pacific cod ( Gadus macrocephalus), walleye pollock ( Gadus chalcogrammus) , Greenland turbot ( Reinhardtius hippoglossoides) , and northern rockfish ( Sebastes polyspinis). Each data set was classified into reproductively immature (non-spawning) and reproductively mature (spawning-capable) categories. Principal component analysis of spectral data showed separation between ovarian tissues of spawning-capable and non-spawning females. Multivariate classification using partial least squares discriminant analysis indicated good discrimination based on spawning status with high predictive accuracy. Greenland turbot and northern rockfish showed clear distinction between ovaries of spawning-capable and non-spawning females and a model validation with 100% and 96.6% classification accuracy, respectively. Pacific cod and walleye pollock had more complicated reproductive patterns at time of collection and classification rates were still 96.6% and 92.1%. This study demonstrated the potential application of FT-NIR spectroscopy to predict spawning status from ovarian tissue even for species with complicated spawning patterns and for collections outside of the preferred spawning period. Future work may include the use of this technology to classify distinct oocyte development stages. Article in Journal/Newspaper Greenland Turbot SAGE Publications Greenland Pacific Journal of Near Infrared Spectroscopy 30 4 179 188
institution Open Polar
collection SAGE Publications
op_collection_id crsagepubl
language English
topic Spectroscopy
spellingShingle Spectroscopy
TenBrink, Todd
Neidetcher, Sandra
Arrington, Morgan
Benson, Irina
Conrath, Christina
Helser, Thomas
Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies
topic_facet Spectroscopy
description Fourier-transform near infrared (FT-NIR) spectroscopy of ovarian tissue was used to predict maturity status of fish species with variable reproductive strategies collected at limited time periods of their spawning cycle. Reference data were derived from histologically prepared tissue samples from four species: Pacific cod ( Gadus macrocephalus), walleye pollock ( Gadus chalcogrammus) , Greenland turbot ( Reinhardtius hippoglossoides) , and northern rockfish ( Sebastes polyspinis). Each data set was classified into reproductively immature (non-spawning) and reproductively mature (spawning-capable) categories. Principal component analysis of spectral data showed separation between ovarian tissues of spawning-capable and non-spawning females. Multivariate classification using partial least squares discriminant analysis indicated good discrimination based on spawning status with high predictive accuracy. Greenland turbot and northern rockfish showed clear distinction between ovaries of spawning-capable and non-spawning females and a model validation with 100% and 96.6% classification accuracy, respectively. Pacific cod and walleye pollock had more complicated reproductive patterns at time of collection and classification rates were still 96.6% and 92.1%. This study demonstrated the potential application of FT-NIR spectroscopy to predict spawning status from ovarian tissue even for species with complicated spawning patterns and for collections outside of the preferred spawning period. Future work may include the use of this technology to classify distinct oocyte development stages.
author2 National Oceanic and Atmospheric Administration
format Article in Journal/Newspaper
author TenBrink, Todd
Neidetcher, Sandra
Arrington, Morgan
Benson, Irina
Conrath, Christina
Helser, Thomas
author_facet TenBrink, Todd
Neidetcher, Sandra
Arrington, Morgan
Benson, Irina
Conrath, Christina
Helser, Thomas
author_sort TenBrink, Todd
title Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies
title_short Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies
title_full Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies
title_fullStr Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies
title_full_unstemmed Fourier transform near infrared spectroscopy as a tool to predict spawning status in Alaskan fishes with variable reproductive strategies
title_sort fourier transform near infrared spectroscopy as a tool to predict spawning status in alaskan fishes with variable reproductive strategies
publisher SAGE Publications
publishDate 2022
url http://dx.doi.org/10.1177/09670335221097005
http://journals.sagepub.com/doi/pdf/10.1177/09670335221097005
http://journals.sagepub.com/doi/full-xml/10.1177/09670335221097005
geographic Greenland
Pacific
geographic_facet Greenland
Pacific
genre Greenland
Turbot
genre_facet Greenland
Turbot
op_source Journal of Near Infrared Spectroscopy
volume 30, issue 4, page 179-188
ISSN 0967-0335 1751-6552
op_rights http://journals.sagepub.com/page/policies/text-and-data-mining-license
op_doi https://doi.org/10.1177/09670335221097005
container_title Journal of Near Infrared Spectroscopy
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