Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus)
Bone extracellular matrix (ECM) proteins play a key role in bone formation and regeneration, including structural and regulatory functions. The Phylobone database consists of 255 ECM protein groups from 39 species and can be used to support bone research. Here, we gathered bone ECM proteins from rei...
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crsagepubl:10.1177/00368504241244666 2024-06-16T07:42:50+00:00 Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus) Sánchez-Reverté, Alba Fontcuberta-Rigo, Margalida Nakamura, Miho Puigbò, Pere Sigrid Juséliuksen Säätiö Japan Society for the Promotion of Science 2024 http://dx.doi.org/10.1177/00368504241244666 https://journals.sagepub.com/doi/pdf/10.1177/00368504241244666 https://journals.sagepub.com/doi/full-xml/10.1177/00368504241244666 en eng SAGE Publications https://creativecommons.org/licenses/by/4.0/ Science Progress volume 107, issue 2 ISSN 0036-8504 2047-7163 journal-article 2024 crsagepubl https://doi.org/10.1177/00368504241244666 2024-05-19T13:03:16Z Bone extracellular matrix (ECM) proteins play a key role in bone formation and regeneration, including structural and regulatory functions. The Phylobone database consists of 255 ECM protein groups from 39 species and can be used to support bone research. Here, we gathered bone ECM proteins from reindeer ( Rangifer tarandus), a member of the Cervidae family. The importance of reindeer lies in their ability to regenerate their antlers, in both male and female individuals. Protein sequences were extracted from the National Center for Biotechnology Information's repository and selected by homology searches. We identified 215 proteins and their corresponding functional domains, which are putatively present in the bone ECM of reindeer. Protein sequence alignments have shown a high degree of conservation between R. tarandus and other members of the Cervidae family. This update expands the Phylobone database and shows that it is a useful resource for the preliminary annotation of bone ECM proteins in novel proteomes. Article in Journal/Newspaper Rangifer tarandus SAGE Publications Science Progress 107 2 |
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Open Polar |
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SAGE Publications |
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language |
English |
description |
Bone extracellular matrix (ECM) proteins play a key role in bone formation and regeneration, including structural and regulatory functions. The Phylobone database consists of 255 ECM protein groups from 39 species and can be used to support bone research. Here, we gathered bone ECM proteins from reindeer ( Rangifer tarandus), a member of the Cervidae family. The importance of reindeer lies in their ability to regenerate their antlers, in both male and female individuals. Protein sequences were extracted from the National Center for Biotechnology Information's repository and selected by homology searches. We identified 215 proteins and their corresponding functional domains, which are putatively present in the bone ECM of reindeer. Protein sequence alignments have shown a high degree of conservation between R. tarandus and other members of the Cervidae family. This update expands the Phylobone database and shows that it is a useful resource for the preliminary annotation of bone ECM proteins in novel proteomes. |
author2 |
Sigrid Juséliuksen Säätiö Japan Society for the Promotion of Science |
format |
Article in Journal/Newspaper |
author |
Sánchez-Reverté, Alba Fontcuberta-Rigo, Margalida Nakamura, Miho Puigbò, Pere |
spellingShingle |
Sánchez-Reverté, Alba Fontcuberta-Rigo, Margalida Nakamura, Miho Puigbò, Pere Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus) |
author_facet |
Sánchez-Reverté, Alba Fontcuberta-Rigo, Margalida Nakamura, Miho Puigbò, Pere |
author_sort |
Sánchez-Reverté, Alba |
title |
Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus) |
title_short |
Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus) |
title_full |
Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus) |
title_fullStr |
Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus) |
title_full_unstemmed |
Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( Rangifer tarandus) |
title_sort |
use of the phylobone database for the annotation of bone extracellular matrix proteins in reindeer ( rangifer tarandus) |
publisher |
SAGE Publications |
publishDate |
2024 |
url |
http://dx.doi.org/10.1177/00368504241244666 https://journals.sagepub.com/doi/pdf/10.1177/00368504241244666 https://journals.sagepub.com/doi/full-xml/10.1177/00368504241244666 |
genre |
Rangifer tarandus |
genre_facet |
Rangifer tarandus |
op_source |
Science Progress volume 107, issue 2 ISSN 0036-8504 2047-7163 |
op_rights |
https://creativecommons.org/licenses/by/4.0/ |
op_doi |
https://doi.org/10.1177/00368504241244666 |
container_title |
Science Progress |
container_volume |
107 |
container_issue |
2 |
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1802010418620661760 |