Range-wide parallel climate-associated genomic clines in Atlantic salmon
Clinal variation across replicated environmental gradients can reveal evidence of local adaptation, providing insight into the demographic and evolutionary processes that shape intraspecific diversity. Using 1773 genome-wide single nucleotide polymorphisms we evaluated latitudinal variation in allel...
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crroyalsociety:10.1098/rsos.171394 2024-06-23T07:51:18+00:00 Range-wide parallel climate-associated genomic clines in Atlantic salmon Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clément, Marie Bradbury, Ian R. 2017 http://dx.doi.org/10.1098/rsos.171394 https://royalsocietypublishing.org/doi/pdf/10.1098/rsos.171394 https://royalsocietypublishing.org/doi/full-xml/10.1098/rsos.171394 en eng The Royal Society https://royalsociety.org/journals/ethics-policies/data-sharing-mining/ Royal Society Open Science volume 4, issue 11, page 171394 ISSN 2054-5703 journal-article 2017 crroyalsociety https://doi.org/10.1098/rsos.171394 2024-06-04T06:23:06Z Clinal variation across replicated environmental gradients can reveal evidence of local adaptation, providing insight into the demographic and evolutionary processes that shape intraspecific diversity. Using 1773 genome-wide single nucleotide polymorphisms we evaluated latitudinal variation in allele frequency for 134 populations of North American and European Atlantic salmon ( Salmo salar ). We detected 84 (4.74%) and 195 (11%) loci showing clinal patterns in North America and Europe, respectively, with 12 clinal loci in common between continents. Clinal single nucleotide polymorphisms were evenly distributed across the salmon genome and logistic regression revealed significant associations with latitude and seasonal temperatures, particularly average spring temperature in both continents. Loci displaying parallel clines were associated with several metabolic and immune functions, suggesting a potential basis for climate-associated adaptive differentiation. These climate-based clines collectively suggest evidence of large-scale environmental associated differences on either side of the North Atlantic. Our results support patterns of parallel evolution on both sides of the North Atlantic, with evidence of both similar and divergent underlying genetic architecture. The identification of climate-associated genomic clines illuminates the role of selection and demographic processes on intraspecific diversity in this species and provides a context in which to evaluate the impacts of climate change. Article in Journal/Newspaper Atlantic salmon North Atlantic Salmo salar The Royal Society Royal Society Open Science 4 11 171394 |
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Open Polar |
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The Royal Society |
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crroyalsociety |
language |
English |
description |
Clinal variation across replicated environmental gradients can reveal evidence of local adaptation, providing insight into the demographic and evolutionary processes that shape intraspecific diversity. Using 1773 genome-wide single nucleotide polymorphisms we evaluated latitudinal variation in allele frequency for 134 populations of North American and European Atlantic salmon ( Salmo salar ). We detected 84 (4.74%) and 195 (11%) loci showing clinal patterns in North America and Europe, respectively, with 12 clinal loci in common between continents. Clinal single nucleotide polymorphisms were evenly distributed across the salmon genome and logistic regression revealed significant associations with latitude and seasonal temperatures, particularly average spring temperature in both continents. Loci displaying parallel clines were associated with several metabolic and immune functions, suggesting a potential basis for climate-associated adaptive differentiation. These climate-based clines collectively suggest evidence of large-scale environmental associated differences on either side of the North Atlantic. Our results support patterns of parallel evolution on both sides of the North Atlantic, with evidence of both similar and divergent underlying genetic architecture. The identification of climate-associated genomic clines illuminates the role of selection and demographic processes on intraspecific diversity in this species and provides a context in which to evaluate the impacts of climate change. |
format |
Article in Journal/Newspaper |
author |
Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clément, Marie Bradbury, Ian R. |
spellingShingle |
Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clément, Marie Bradbury, Ian R. Range-wide parallel climate-associated genomic clines in Atlantic salmon |
author_facet |
Jeffery, Nicholas W. Stanley, Ryan R. E. Wringe, Brendan F. Guijarro-Sabaniel, Javier Bourret, Vincent Bernatchez, Louis Bentzen, Paul Beiko, Robert G. Gilbey, John Clément, Marie Bradbury, Ian R. |
author_sort |
Jeffery, Nicholas W. |
title |
Range-wide parallel climate-associated genomic clines in Atlantic salmon |
title_short |
Range-wide parallel climate-associated genomic clines in Atlantic salmon |
title_full |
Range-wide parallel climate-associated genomic clines in Atlantic salmon |
title_fullStr |
Range-wide parallel climate-associated genomic clines in Atlantic salmon |
title_full_unstemmed |
Range-wide parallel climate-associated genomic clines in Atlantic salmon |
title_sort |
range-wide parallel climate-associated genomic clines in atlantic salmon |
publisher |
The Royal Society |
publishDate |
2017 |
url |
http://dx.doi.org/10.1098/rsos.171394 https://royalsocietypublishing.org/doi/pdf/10.1098/rsos.171394 https://royalsocietypublishing.org/doi/full-xml/10.1098/rsos.171394 |
genre |
Atlantic salmon North Atlantic Salmo salar |
genre_facet |
Atlantic salmon North Atlantic Salmo salar |
op_source |
Royal Society Open Science volume 4, issue 11, page 171394 ISSN 2054-5703 |
op_rights |
https://royalsociety.org/journals/ethics-policies/data-sharing-mining/ |
op_doi |
https://doi.org/10.1098/rsos.171394 |
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Royal Society Open Science |
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4 |
container_issue |
11 |
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171394 |
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1802642349503807488 |