Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae
Abstract Aims This work aims to characterize the microbial diversity of the encrusting sponge Cliona varians, a pore-forming and coral reef bioeroding marine sponge of emerging spread related to ocean acidification. Methods and results We analysed the microbiome composition by 16S V4 amplicon next-g...
Published in: | Journal of Applied Microbiology |
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Oxford University Press (OUP)
2022
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Online Access: | http://dx.doi.org/10.1111/jam.15714 https://onlinelibrary.wiley.com/doi/pdf/10.1111/jam.15714 https://onlinelibrary.wiley.com/doi/full-xml/10.1111/jam.15714 https://academic.oup.com/jambio/article-pdf/133/3/2027/48734463/jambio2027.pdf |
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croxfordunivpr:10.1111/jam.15714 2024-06-23T07:55:53+00:00 Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae Sánchez-Suárez, Jeysson Díaz, Luis Junca, Howard Garcia-Bonilla, Erika Villamil, Luisa Ministerio de Ciencia, Tecnología e Innovación Universidad de La Sabana 2022 http://dx.doi.org/10.1111/jam.15714 https://onlinelibrary.wiley.com/doi/pdf/10.1111/jam.15714 https://onlinelibrary.wiley.com/doi/full-xml/10.1111/jam.15714 https://academic.oup.com/jambio/article-pdf/133/3/2027/48734463/jambio2027.pdf en eng Oxford University Press (OUP) https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model Journal of Applied Microbiology volume 133, issue 3, page 2027-2038 ISSN 1365-2672 1364-5072 journal-article 2022 croxfordunivpr https://doi.org/10.1111/jam.15714 2024-06-11T04:21:01Z Abstract Aims This work aims to characterize the microbial diversity of the encrusting sponge Cliona varians, a pore-forming and coral reef bioeroding marine sponge of emerging spread related to ocean acidification. Methods and results We analysed the microbiome composition by 16S V4 amplicon next-generation sequencing in a community of the bioeroding coral reef encrusting/excavating marine sponge Cliona varians thriving at the Southern Caribbean Sea. About 87.21% and 6.76% of the sequences retrieved were assigned to the domain Bacteria and Archaea. The most predominant operational taxonomic units were classified as members of the order Rhizobiales and family Nitrosopumilaceae, representing members of not yet characterized genera. Features found strictly conserved in the strain/genomic representatives reported in those microbial taxa are nitrogen fixation and transformation. Conclusion Our results suggest, in accordance with recent results, that these microbiome members and associated functions could be contributing to the biological fitness of the sponge to be able to colonize and bioerode in environments with low access and scarce availability of nitrogen sources. Significance and Impact of Study Coral reefs bioresources such as sponge holobionts are intriguing and complex ecosystem units. This study contributes to the knowledge of how C. varians microbiota is composed or shaped, which is crucial to understand its ecological functions. Article in Journal/Newspaper Ocean acidification Oxford University Press Journal of Applied Microbiology 133 3 2027 2038 |
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Oxford University Press |
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croxfordunivpr |
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English |
description |
Abstract Aims This work aims to characterize the microbial diversity of the encrusting sponge Cliona varians, a pore-forming and coral reef bioeroding marine sponge of emerging spread related to ocean acidification. Methods and results We analysed the microbiome composition by 16S V4 amplicon next-generation sequencing in a community of the bioeroding coral reef encrusting/excavating marine sponge Cliona varians thriving at the Southern Caribbean Sea. About 87.21% and 6.76% of the sequences retrieved were assigned to the domain Bacteria and Archaea. The most predominant operational taxonomic units were classified as members of the order Rhizobiales and family Nitrosopumilaceae, representing members of not yet characterized genera. Features found strictly conserved in the strain/genomic representatives reported in those microbial taxa are nitrogen fixation and transformation. Conclusion Our results suggest, in accordance with recent results, that these microbiome members and associated functions could be contributing to the biological fitness of the sponge to be able to colonize and bioerode in environments with low access and scarce availability of nitrogen sources. Significance and Impact of Study Coral reefs bioresources such as sponge holobionts are intriguing and complex ecosystem units. This study contributes to the knowledge of how C. varians microbiota is composed or shaped, which is crucial to understand its ecological functions. |
author2 |
Ministerio de Ciencia, Tecnología e Innovación Universidad de La Sabana |
format |
Article in Journal/Newspaper |
author |
Sánchez-Suárez, Jeysson Díaz, Luis Junca, Howard Garcia-Bonilla, Erika Villamil, Luisa |
spellingShingle |
Sánchez-Suárez, Jeysson Díaz, Luis Junca, Howard Garcia-Bonilla, Erika Villamil, Luisa Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae |
author_facet |
Sánchez-Suárez, Jeysson Díaz, Luis Junca, Howard Garcia-Bonilla, Erika Villamil, Luisa |
author_sort |
Sánchez-Suárez, Jeysson |
title |
Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae |
title_short |
Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae |
title_full |
Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae |
title_fullStr |
Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae |
title_full_unstemmed |
Microbiome composition of the marine sponge Cliona varians at the neotropical southern Caribbean Sea displays a predominant core of Rhizobiales and Nitrosopumilaceae |
title_sort |
microbiome composition of the marine sponge cliona varians at the neotropical southern caribbean sea displays a predominant core of rhizobiales and nitrosopumilaceae |
publisher |
Oxford University Press (OUP) |
publishDate |
2022 |
url |
http://dx.doi.org/10.1111/jam.15714 https://onlinelibrary.wiley.com/doi/pdf/10.1111/jam.15714 https://onlinelibrary.wiley.com/doi/full-xml/10.1111/jam.15714 https://academic.oup.com/jambio/article-pdf/133/3/2027/48734463/jambio2027.pdf |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_source |
Journal of Applied Microbiology volume 133, issue 3, page 2027-2038 ISSN 1365-2672 1364-5072 |
op_rights |
https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model |
op_doi |
https://doi.org/10.1111/jam.15714 |
container_title |
Journal of Applied Microbiology |
container_volume |
133 |
container_issue |
3 |
container_start_page |
2027 |
op_container_end_page |
2038 |
_version_ |
1802648658950225920 |