A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale
Abstract Many Antarctic notothenioid fishes have major rearrangements in their mitochondrial (mt) genomes. Here, we report the complete mt genomes of 3 trematomin notothenioids: the bald notothen (Trematomus (Pagothenia) borchgrevinki), the spotted notothen (T. nicolai), and the emerald notothen (T....
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Oxford University Press (OUP)
2022
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croxfordunivpr:10.1093/jhered/esac028 2024-09-15T17:44:49+00:00 A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale Patel, Selina Evans, Clive W Stuckey, Alex Matzke, Nicholas J Millar, Craig D Baker, C Scott University of Auckland Allan Wilson Centre for Molecular Ecology and Evolution 2022 http://dx.doi.org/10.1093/jhered/esac028 https://academic.oup.com/jhered/advance-article-pdf/doi/10.1093/jhered/esac028/44318127/esac028.pdf https://academic.oup.com/jhered/article-pdf/113/4/414/45050964/esac028.pdf en eng Oxford University Press (OUP) https://creativecommons.org/licenses/by-nc/4.0/ Journal of Heredity volume 113, issue 4, page 414-420 ISSN 0022-1503 1465-7333 journal-article 2022 croxfordunivpr https://doi.org/10.1093/jhered/esac028 2024-07-08T04:24:38Z Abstract Many Antarctic notothenioid fishes have major rearrangements in their mitochondrial (mt) genomes. Here, we report the complete mt genomes of 3 trematomin notothenioids: the bald notothen (Trematomus (Pagothenia) borchgrevinki), the spotted notothen (T. nicolai), and the emerald notothen (T. bernacchii). The 3 mt genomes were sequenced using next-generation Illumina technology, and the assemblies verified by Sanger sequencing. When compared with the canonical mt gene order of the Antarctic silverfish (Pleuragramma antarctica), we found a large gene inversion in the 3 trematomin mt genomes that included tRNAIle, ND1, tRNALeu2, 16S, tRNAVal, 12S, tRNAPhe, and the control region. The trematomin mt genomes contained 3 intergenic spacers, which are thought to be the remnants of previous gene and control region duplications. All control regions included the characteristic conserved regulatory sequence motifs. Although short-read next-generation DNA sequencing technology has allowed the rapid and cost-effective sequencing of a large number of complete mt genomes, it is essential in all cases to verify the assembly in order to prevent the publication and use of erroneous data. Article in Journal/Newspaper Antarc* Antarctic Antarctic silverfish Antarctica Oxford University Press Journal of Heredity |
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Open Polar |
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Oxford University Press |
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croxfordunivpr |
language |
English |
description |
Abstract Many Antarctic notothenioid fishes have major rearrangements in their mitochondrial (mt) genomes. Here, we report the complete mt genomes of 3 trematomin notothenioids: the bald notothen (Trematomus (Pagothenia) borchgrevinki), the spotted notothen (T. nicolai), and the emerald notothen (T. bernacchii). The 3 mt genomes were sequenced using next-generation Illumina technology, and the assemblies verified by Sanger sequencing. When compared with the canonical mt gene order of the Antarctic silverfish (Pleuragramma antarctica), we found a large gene inversion in the 3 trematomin mt genomes that included tRNAIle, ND1, tRNALeu2, 16S, tRNAVal, 12S, tRNAPhe, and the control region. The trematomin mt genomes contained 3 intergenic spacers, which are thought to be the remnants of previous gene and control region duplications. All control regions included the characteristic conserved regulatory sequence motifs. Although short-read next-generation DNA sequencing technology has allowed the rapid and cost-effective sequencing of a large number of complete mt genomes, it is essential in all cases to verify the assembly in order to prevent the publication and use of erroneous data. |
author2 |
Baker, C Scott University of Auckland Allan Wilson Centre for Molecular Ecology and Evolution |
format |
Article in Journal/Newspaper |
author |
Patel, Selina Evans, Clive W Stuckey, Alex Matzke, Nicholas J Millar, Craig D |
spellingShingle |
Patel, Selina Evans, Clive W Stuckey, Alex Matzke, Nicholas J Millar, Craig D A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale |
author_facet |
Patel, Selina Evans, Clive W Stuckey, Alex Matzke, Nicholas J Millar, Craig D |
author_sort |
Patel, Selina |
title |
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale |
title_short |
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale |
title_full |
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale |
title_fullStr |
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale |
title_full_unstemmed |
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale |
title_sort |
unique mitochondrial gene block inversion in antarctic trematomin fishes: a cautionary tale |
publisher |
Oxford University Press (OUP) |
publishDate |
2022 |
url |
http://dx.doi.org/10.1093/jhered/esac028 https://academic.oup.com/jhered/advance-article-pdf/doi/10.1093/jhered/esac028/44318127/esac028.pdf https://academic.oup.com/jhered/article-pdf/113/4/414/45050964/esac028.pdf |
genre |
Antarc* Antarctic Antarctic silverfish Antarctica |
genre_facet |
Antarc* Antarctic Antarctic silverfish Antarctica |
op_source |
Journal of Heredity volume 113, issue 4, page 414-420 ISSN 0022-1503 1465-7333 |
op_rights |
https://creativecommons.org/licenses/by-nc/4.0/ |
op_doi |
https://doi.org/10.1093/jhered/esac028 |
container_title |
Journal of Heredity |
_version_ |
1810492488304033792 |