Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest
Abstract Sheehan, T. F., Legault, C. M., King, T. L., and Spidle, A. P. 2010. Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest. – ICES Journal of Marine Science, 67: 537–550. A multistock Atlantic salmon (Salmo salar) f...
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Online Access: | http://dx.doi.org/10.1093/icesjms/fsp247 http://academic.oup.com/icesjms/article-pdf/67/3/537/29135203/fsp247.pdf |
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croxfordunivpr:10.1093/icesjms/fsp247 2024-09-15T17:56:03+00:00 Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest Sheehan, Timothy F. Legault, Christopher M. King, Timothy L. Spidle, Adrian P. 2009 http://dx.doi.org/10.1093/icesjms/fsp247 http://academic.oup.com/icesjms/article-pdf/67/3/537/29135203/fsp247.pdf en eng Oxford University Press (OUP) ICES Journal of Marine Science volume 67, issue 3, page 537-550 ISSN 1095-9289 1054-3139 journal-article 2009 croxfordunivpr https://doi.org/10.1093/icesjms/fsp247 2024-07-01T04:19:25Z Abstract Sheehan, T. F., Legault, C. M., King, T. L., and Spidle, A. P. 2010. Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest. – ICES Journal of Marine Science, 67: 537–550. A multistock Atlantic salmon (Salmo salar) fishery operates off the coast of West Greenland and harvests fish of North American and European origin. Annual landings peaked in 1971 at 2700 t, but declined to 22 t in 2003. Biological data are collected to characterize the catch and its stock composition. Multilocus genotypes, generated via microsatellite DNA analysis, are used to derive statistics on continent of origin and less accurate finer-scale assignments. We developed a probabilistic-based genetic assignment (PGA) model to estimate the contribution of salmon from individual North American rivers in the 2000–2003 West Greenland catch. Uncertainty associated with finer-scale assignments is addressed by incorporating estimated misclassification rates and by reporting results as distributions generated via Monte Carlo resampling. US-origin fish represented ∼1% (by number) of the salmon harvested at West Greenland during the years 2000–2003. The resulting loss of spawners to this stock complex was approximately half the estimated adult returns in 2001, but was below 4% in the other 3 years. This is the first attempt to partition the US component of the West Greenland mixed-stock fishery to its finer parts. The approach can be used to identify the effects of fishing on individual stocks within any multistock complex where genetic samples of known origin are available. Article in Journal/Newspaper Atlantic salmon Greenland Salmo salar Oxford University Press ICES Journal of Marine Science 67 3 537 550 |
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Oxford University Press |
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croxfordunivpr |
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English |
description |
Abstract Sheehan, T. F., Legault, C. M., King, T. L., and Spidle, A. P. 2010. Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest. – ICES Journal of Marine Science, 67: 537–550. A multistock Atlantic salmon (Salmo salar) fishery operates off the coast of West Greenland and harvests fish of North American and European origin. Annual landings peaked in 1971 at 2700 t, but declined to 22 t in 2003. Biological data are collected to characterize the catch and its stock composition. Multilocus genotypes, generated via microsatellite DNA analysis, are used to derive statistics on continent of origin and less accurate finer-scale assignments. We developed a probabilistic-based genetic assignment (PGA) model to estimate the contribution of salmon from individual North American rivers in the 2000–2003 West Greenland catch. Uncertainty associated with finer-scale assignments is addressed by incorporating estimated misclassification rates and by reporting results as distributions generated via Monte Carlo resampling. US-origin fish represented ∼1% (by number) of the salmon harvested at West Greenland during the years 2000–2003. The resulting loss of spawners to this stock complex was approximately half the estimated adult returns in 2001, but was below 4% in the other 3 years. This is the first attempt to partition the US component of the West Greenland mixed-stock fishery to its finer parts. The approach can be used to identify the effects of fishing on individual stocks within any multistock complex where genetic samples of known origin are available. |
format |
Article in Journal/Newspaper |
author |
Sheehan, Timothy F. Legault, Christopher M. King, Timothy L. Spidle, Adrian P. |
spellingShingle |
Sheehan, Timothy F. Legault, Christopher M. King, Timothy L. Spidle, Adrian P. Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest |
author_facet |
Sheehan, Timothy F. Legault, Christopher M. King, Timothy L. Spidle, Adrian P. |
author_sort |
Sheehan, Timothy F. |
title |
Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest |
title_short |
Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest |
title_full |
Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest |
title_fullStr |
Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest |
title_full_unstemmed |
Probabilistic-based genetic assignment model: assignments to subcontinent of origin of the West Greenland Atlantic salmon harvest |
title_sort |
probabilistic-based genetic assignment model: assignments to subcontinent of origin of the west greenland atlantic salmon harvest |
publisher |
Oxford University Press (OUP) |
publishDate |
2009 |
url |
http://dx.doi.org/10.1093/icesjms/fsp247 http://academic.oup.com/icesjms/article-pdf/67/3/537/29135203/fsp247.pdf |
genre |
Atlantic salmon Greenland Salmo salar |
genre_facet |
Atlantic salmon Greenland Salmo salar |
op_source |
ICES Journal of Marine Science volume 67, issue 3, page 537-550 ISSN 1095-9289 1054-3139 |
op_doi |
https://doi.org/10.1093/icesjms/fsp247 |
container_title |
ICES Journal of Marine Science |
container_volume |
67 |
container_issue |
3 |
container_start_page |
537 |
op_container_end_page |
550 |
_version_ |
1810432269739884544 |