Siberian sturgeon multi-tissue reference transcriptome database
Abstract Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based funct...
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2020
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Online Access: | http://dx.doi.org/10.1093/database/baaa082 http://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa082/34526692/baaa082.pdf |
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croxfordunivpr:10.1093/database/baaa082 2024-06-09T07:49:31+00:00 Siberian sturgeon multi-tissue reference transcriptome database Klopp, Christophe Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise Universidad de la República Oriental del Uruguay Agencia Nacional de Investigación e Innovación-Dirección Nacional de Recursos Acuáticos ANII-DINARA Agencia Nacional de Investigación e Innovación 2020 http://dx.doi.org/10.1093/database/baaa082 http://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa082/34526692/baaa082.pdf en eng Oxford University Press (OUP) http://creativecommons.org/licenses/by/4.0/ Database volume 2020 ISSN 1758-0463 journal-article 2020 croxfordunivpr https://doi.org/10.1093/database/baaa082 2024-05-10T13:16:00Z Abstract Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies. Results: We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets. Availability: The database is publicly available at http://siberiansturgeontissuedb.sigenae.org Supplementary information: Supplementary data are available at Database online. Article in Journal/Newspaper Siberian sturgeon Oxford University Press Database 2020 |
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Open Polar |
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Oxford University Press |
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croxfordunivpr |
language |
English |
description |
Abstract Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies. Results: We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets. Availability: The database is publicly available at http://siberiansturgeontissuedb.sigenae.org Supplementary information: Supplementary data are available at Database online. |
author2 |
Universidad de la República Oriental del Uruguay Agencia Nacional de Investigación e Innovación-Dirección Nacional de Recursos Acuáticos ANII-DINARA Agencia Nacional de Investigación e Innovación |
format |
Article in Journal/Newspaper |
author |
Klopp, Christophe Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise |
spellingShingle |
Klopp, Christophe Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise Siberian sturgeon multi-tissue reference transcriptome database |
author_facet |
Klopp, Christophe Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise |
author_sort |
Klopp, Christophe |
title |
Siberian sturgeon multi-tissue reference transcriptome database |
title_short |
Siberian sturgeon multi-tissue reference transcriptome database |
title_full |
Siberian sturgeon multi-tissue reference transcriptome database |
title_fullStr |
Siberian sturgeon multi-tissue reference transcriptome database |
title_full_unstemmed |
Siberian sturgeon multi-tissue reference transcriptome database |
title_sort |
siberian sturgeon multi-tissue reference transcriptome database |
publisher |
Oxford University Press (OUP) |
publishDate |
2020 |
url |
http://dx.doi.org/10.1093/database/baaa082 http://academic.oup.com/database/article-pdf/doi/10.1093/database/baaa082/34526692/baaa082.pdf |
genre |
Siberian sturgeon |
genre_facet |
Siberian sturgeon |
op_source |
Database volume 2020 ISSN 1758-0463 |
op_rights |
http://creativecommons.org/licenses/by/4.0/ |
op_doi |
https://doi.org/10.1093/database/baaa082 |
container_title |
Database |
container_volume |
2020 |
_version_ |
1801382166123249664 |