Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States

ABSTRACT This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae , Proteobacteria , and Firmicutes were the most abundant phyla. Small numbers of operational t...

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Published in:Genome Announcements
Main Authors: Li, Zhen, Wang, Leyi
Format: Article in Journal/Newspaper
Language:English
Published: American Society for Microbiology 2017
Subjects:
Crassostrea gigas
Pacific oyster
Online Access:http://dx.doi.org/10.1128/genomea.00468-17
https://journals.asm.org/doi/pdf/10.1128/genomeA.00468-17
id crasmicro:10.1128/genomea.00468-17
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spelling crasmicro:10.1128/genomea.00468-17 2024-09-15T18:03:06+00:00 Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States Li, Zhen Wang, Leyi 2017 http://dx.doi.org/10.1128/genomea.00468-17 https://journals.asm.org/doi/pdf/10.1128/genomeA.00468-17 en eng American Society for Microbiology http://creativecommons.org/licenses/by/4.0/ https://journals.asm.org/non-commercial-tdm-license Genome Announcements volume 5, issue 23 ISSN 2169-8287 journal-article 2017 crasmicro https://doi.org/10.1128/genomea.00468-17 2024-08-26T04:05:59Z ABSTRACT This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae , Proteobacteria , and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples. Article in Journal/Newspaper Crassostrea gigas Pacific oyster ASM Journals (American Society for Microbiology) Genome Announcements 5 23
institution Open Polar
collection ASM Journals (American Society for Microbiology)
op_collection_id crasmicro
language English
description ABSTRACT This is the first study analyzing Pacific oyster microbiota in the Puget Sound estuarine system using a next-generation sequencing method. Taxonomic analysis indicated that Tenericutes, Chlamydiae , Proteobacteria , and Firmicutes were the most abundant phyla. Small numbers of operational taxonomic units (OTUs) belonging to the Vibrio genus were detected in all the oyster microbiome samples.
format Article in Journal/Newspaper
author Li, Zhen
Wang, Leyi
spellingShingle Li, Zhen
Wang, Leyi
Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States
author_facet Li, Zhen
Wang, Leyi
author_sort Li, Zhen
title Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States
title_short Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States
title_full Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States
title_fullStr Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States
title_full_unstemmed Metagenomic 16S rRNA Sequencing Analysis of Pacific Oyster ( Crassostrea gigas ) Microbiota from the Puget Sound Region in the United States
title_sort metagenomic 16s rrna sequencing analysis of pacific oyster ( crassostrea gigas ) microbiota from the puget sound region in the united states
publisher American Society for Microbiology
publishDate 2017
url http://dx.doi.org/10.1128/genomea.00468-17
https://journals.asm.org/doi/pdf/10.1128/genomeA.00468-17
genre Crassostrea gigas
Pacific oyster
genre_facet Crassostrea gigas
Pacific oyster
op_source Genome Announcements
volume 5, issue 23
ISSN 2169-8287
op_rights http://creativecommons.org/licenses/by/4.0/
https://journals.asm.org/non-commercial-tdm-license
op_doi https://doi.org/10.1128/genomea.00468-17
container_title Genome Announcements
container_volume 5
container_issue 23
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