Search Results

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves

by Janowitz Koch, Ilana, Clark, Michelle M., Thompson, Michael J., Deere‐Machemer, Kerry A., Wang, Jun, Duarte, Lionel, Gnanadesikan, Gitanjali E., McCoy, Eskender L., Rubbi, Liudmilla, Stahler, Daniel R., Pellegrini, Matteo, Ostrander, Elaine A., Wayne, Robert K., Sinsheimer, Janet S., vonHoldt, Bridgett M.
Published in Molecular Ecology (2016)

Studies of modern Italian dog populations reveal multiple patterns for domestic breed evolution

by Talenti, Andrea, Dreger, Dayna L., Frattini, Stefano, Polli, Michele, Marelli, Stefano, Harris, Alexander C., Liotta, Luigi, Cocco, Raffaella, Hogan, Andrew N., Bigi, Daniele, Caniglia, Romolo, Parker, Heidi G., Pagnacco, Giulio, Ostrander, Elaine A., Crepaldi, Paola
Published in Ecology and Evolution (2018)

Depletion of Hemoglobin Transcripts and Long-Read Sequencing Improves the Transcriptome Annotation of the Polar Bear (Ursus maritimus)

by Byrne, Ashley, Supple, Megan A., Volden, Roger, Laidre, Kristin L., Shapiro, Beth, Vollmers, Christopher
Published in Frontiers in Genetics (2019)

Community dissemination and genetic research: Moving beyond results reporting

by Trinidad, Susan Brown, Ludman, Evette J., Hopkins, Scarlett, James, Rosalina D., Hoeft, Theresa J., Kinegak, Annie, Lupie, Henry, Kinegak, Ralph, Boyer, Bert B., Burke, Wylie
Published in American Journal of Medical Genetics Part A (2015)

Genetic Origins of the Two Canis lupus familiaris (Dog) Freight Dog Populations

by Ali, Muhammad Basil, Dreger, Dayna L, Buckley, Reuben M, Mansoor, Shahid, Khan, Qaiser M, Ostrander, Elaine A
Published in Journal of Heredity (2022)

Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity

by Chu, Benjamin B, Keys, Kevin L, German, Christopher A, Zhou, Hua, Zhou, Jin J, Sobel, Eric M, Sinsheimer, Janet S, Lange, Kenneth
Published in GigaScience (2020)

A genomic map of a 6-Mb region at 13q21-q22 implicated in cancer development: identification and characterization of candidate genes

by Rozenblum, Ester, Vahteristo, Pia, Sandberg, Therese, Bergthorsson, Jon Thor, Syrjakoski, Kirsi, Weaver, Don, Haraldsson, Karin, Johannsdottir, Hrefna Kristin, Vehmanen, Paula, Nigam, Savita, Golberger, Natalie, Robbins, Christiane, Pak, Evgenia, Dutra, Amalia, Gillander, Elizabeth, Stephan, Dietrich A, Bailey-Wilson, Joan, Juo, Suh-Hang Hank, Kainu, Tommi, Arason, Adalgeir, Barkardottir, Rosa Bjork, Nevanlinna, Heli, Borg, Ake, Kallioniemi, Olli-P
Published in Human Genetics (2008)

Worldwide patterns of genomic variation and admixture in gray wolves

by Fan, Zhenxin, Serres-Armero, Aitor, Ramírez, Óscar, Marqués-Bonet, Tomàs, Wayne, Robert K.
Published in Genome Research (2015)

A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography

by Bukhman, Yury V, Morin, Phillip A, Meyer, Susanne, Chu, Li-Fang, Jacobsen, Jeff K, Antosiewicz-Bourget, Jessica, Mamott, Daniel, Gonzales, Maylie, Argus, Cara, Bolin, Jennifer, Berres, Mark E, Fedrigo, Olivier, Steill, John, Swanson, Scott A, Jiang, Peng, Rhie, Arang, Formenti, Giulio, Phillippy, Adam M, Harris, Robert S, Wood, Jonathan M D, Howe, Kerstin, Kirilenko, Bogdan M, Munegowda, Chetan, Hiller, Michael, Jain, Aashish, Kihara, Daisuke, Johnston, J Spencer, Ionkov, Alexander, Raja, Kalpana, Toh, Huishi, Lang, Aimee, Wolf, Magnus, Jarvis, Erich D, Thomson, James A, Chaisson, Mark J P, Stewart, Ron
Published in Molecular Biology and Evolution (2024)

Contrasting Phylogeographic Patterns of Mitochondrial and Genome-Wide Variation in the Groundwater Amphipod Crangonyx islandicus That Survived the Ice Age in Iceland

by Eme, David, Westfall, Kristen, Matthíasardóttir, Brynja, Kristjánsson, Bjarni, Pálsson, Snæbjörn
Published in Diversity (2023)

Contrasting Phylogeographic Patterns of Mitochondrial and Genome-Wide Variation in the Groundwater Amphipod Crangonyx islandicus That Survived the Ice Age in Iceland

by Eme, David, Westfall, Kristen, M, Matthíasardóttir, Brynja, Kristjánsson, Bjarni, Kristófer, Pálsson, Snæbjörn
Published in Diversity (2023)

Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome

by Jagannathan, Vidhya, Hitte, Christophe, Kidd, Jeffrey M, Masterson, Patrick, Murphy, Terence D, Emery, Sarah, Davis, Brian, Buckley, Reuben M, Liu, Yan-Hu, Zhang, Xiang-Quan, Leeb, Tosso, Zhang, Ya-Ping, Ostrander, Elaine A, Wang, Guo-Dong
Published in Genes (2021)

Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome

by Jagannathan, Vidhya, Hitte, Christophe, Kidd, Jeffrey M, Masterson, Patrick, Murphy, Terence D, Emery, Sarah, Davis, Brian, Buckley, Reuben M, Liu, Yan-Hu, Zhang, Xiang-Quan, Leeb, Tosso, Zhang, Ya-Ping, Ostrander, Elaine A, Wang, Guo-Dong
Published in Genes (2021)

Towards complete and error-free genome assemblies of all vertebrate species

by Rhie, Arang, McCarthy, Shane A., Fedrigo, Olivier, Damas, Joana, Formenti, Giulio, Koren, Sergey, Uliano-Silva, Marcela, Chow, William, Fungtammasan, Arkarachai, Kim, Juwan, Lee, Chul, Ko, Byung June, Chaisson, Mark, Gedman, Gregory L., Cantin, Lindsey J., Thibaud-Nissen, Francoise, Haggerty, Leanne, Bista, Iliana, Smith, Michelle, Haase, Bettina, Mountcastle, Jacquelyn, Winkler, Sylke, Paez, Sadye, Howard, Jason, Vernes, Sonja C, Lama, Tanya M, Grutzner, Frank, Warren, Wesley C., Balakrishnan, Christopher N., Burt, Dave, George, Julia M., Biegler, Matthew T., Iorns, David, Digby, Andrew, Eason, Daryl, Robertson, Bruce, Edwards, Taylor, Wilkinson, Mark, Turner, George, Meyer, Axel, Kautt, Andreas F., Franchini, Paolo, Detrich III, H. William, Svardal, Hannes, Wagner, Maximilian, Naylor, Gavin J. P., Pippel, Martin, Malinsky, Milan, Mooney, Mark, Simbirsky, Maria, Hannigan, Brett T., Pesout, Trevor, Houck, Marlys L., Misuraca, Ann, Kingan, Sarah B., Hall, Richard, Kronenberg, Zev, Sović, Ivan, Dunn, Christopher, Ning, Zemin, Hastie, Alex, Lee, Joyce, Selvaraj, Siddarth, Green, Richard E., Putnam, Nicholas H., Gut, Ivo, Ghurye, Jay, Garrison, Erik, Sims, Ying, Collins, Joanna, Pelan, Sarah, Torrance, James, Tracey, Alan, Wood, Jonathan, Dagnew, Robel E., Guan, Dengfeng, London, Sarah E., Clayton, David F., Mello, Claudio V., Friedrich, Samantha R., Lovell, Peter V., Osipova, Ekaterina, Al-Ajli, Farooq O., Secomandi, Simona, Kim, Heebal, Theofanopoulou, Constantina, Hiller, Michael, Zhou, Yang, Harris, Robert S., Makova, Kateryna D., Medvedev, Paul, Hoffman, Jinna, Masterson, Patrick, Clark, Karen, Martin, Fergal, Howe, Kevin, Flicek, Paul, Walenz, Brian P., Kwak, Woori, Clawson, Hiram, Diekhans, Mark, Nassar, Luis, Paten, Benedict, Kraus, Robert H. S., Crawford, Andrew J., Gilbert, M.Thomas P., Zhang, Guojie, Venkatesh, Byrappa, Murphy, Robert W., Koepfli, Klaus-Peter, Shapiro, Beth, Johnson, Warren E., Di Palma, Federica, Marqués-Bonet, Tomàs, Teeling, Emma C., Warnow, Tandy, Marshall Graves, Jennifer, Ryder, Oliver A., Haussler, David, O’Brien, Stephen J., Korlach, Jonas, Lewin, Harris A., Howe, Kerstin, Myers, Eugene W., Durbin, Richard, Phillippy, Adam M., Jarvis, Erich D.
Published in Nature (2021)

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

by Plassais, Jocelyn, Vonholdt, Bridgett M, Parker, Heidi G, Carmagnini, Alberto, Dubos, Nicolas, Papa, Ilenia, Bevant, Kevin, Derrien, Thomas, Hennelly, Lauren M, Whitaker, D Thad, Harris, Alex C, Hogan, Andrew N, Huson, Heather J, Zaibert, Victor F, Linderholm, Anna, Haile, James, Fest, Thierry, Habib, Bilal, Sacks, Benjamin N, Benecke, Norbert, Outram, Alan K, Sablin, Mikhail V, Germonpré, Mietje, Larson, Greger, Frantz, Laurent, Ostrander, Elaine A
Published in Current Biology (2022)

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

by Plassais, Jocelyn, Vonholdt, Bridgett M, Parker, Heidi G, Carmagnini, Alberto, Dubos, Nicolas, Papa, Ilenia, Bevant, Kevin, Derrien, Thomas, Hennelly, Lauren M, Whitaker, D Thad, Harris, Alex C, Hogan, Andrew N, Huson, Heather J, Zaibert, Victor F, Linderholm, Anna, Haile, James, Fest, Thierry, Habib, Bilal, Sacks, Benjamin N, Benecke, Norbert, Outram, Alan K, Sablin, Mikhail V, Germonpré, Mietje, Larson, Greger, Frantz, Laurent, Ostrander, Elaine A
Published in Current Biology (2022)

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

by Plassais, Jocelyn, Vonholdt, Bridgett M, Parker, Heidi G, Carmagnini, Alberto, Dubos, Nicolas, Papa, Ilenia, Bevant, Kevin, Derrien, Thomas, Hennelly, Lauren M, Whitaker, D Thad, Harris, Alex C, Hogan, Andrew N, Huson, Heather J, Zaibert, Victor F, Linderholm, Anna, Haile, James, Fest, Thierry, Habib, Bilal, Sacks, Benjamin N, Benecke, Norbert, Outram, Alan K, Sablin, Mikhail V, Germonpré, Mietje, Larson, Greger, Frantz, Laurent, Ostrander, Elaine A
Published in Current Biology (2022)

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

by Plassais, Jocelyn, Vonholdt, Bridgett M, Parker, Heidi G, Carmagnini, Alberto, Dubos, Nicolas, Papa, Ilenia, Bevant, Kevin, Derrien, Thomas, Hennelly, Lauren M, Whitaker, D Thad, Harris, Alex C, Hogan, Andrew N, Huson, Heather J, Zaibert, Victor F, Linderholm, Anna, Haile, James, Fest, Thierry, Habib, Bilal, Sacks, Benjamin N, Benecke, Norbert, Outram, Alan K, Sablin, Mikhail V, Germonpré, Mietje, Larson, Greger, Frantz, Laurent, Ostrander, Elaine A
Published in Current Biology (2022)

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

by Plassais, Jocelyn, Vonholdt, Bridgett M, Parker, Heidi G, Carmagnini, Alberto, Dubos, Nicolas, Papa, Ilenia, Bevant, Kevin, Derrien, Thomas, Hennelly, Lauren M, Whitaker, D Thad, Harris, Alex C, Hogan, Andrew N, Huson, Heather J, Zaibert, Victor F, Linderholm, Anna, Haile, James, Fest, Thierry, Habib, Bilal, Sacks, Benjamin N, Benecke, Norbert, Outram, Alan K, Sablin, Mikhail V, Germonpré, Mietje, Larson, Greger, Frantz, Laurent, Ostrander, Elaine A
Published in Current Biology (2022)

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

by Plassais, Jocelyn, Vonholdt, Bridgett M, Parker, Heidi G, Carmagnini, Alberto, Dubos, Nicolas, Papa, Ilenia, Bevant, Kevin, Derrien, Thomas, Hennelly, Lauren M, Whitaker, D Thad, Harris, Alex C, Hogan, Andrew N, Huson, Heather J, Zaibert, Victor F, Linderholm, Anna, Haile, James, Fest, Thierry, Habib, Bilal, Sacks, Benjamin N, Benecke, Norbert, Outram, Alan K, Sablin, Mikhail V, Germonpré, Mietje, Larson, Greger, Frantz, Laurent, Ostrander, Elaine A
Published in Current Biology (2022)